Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_C09
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.032
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.39
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 8.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.032
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +3
Query: 696 GXGGSGXXRSGXPXPGXRGPXXXAGXCSSGWXXGXRWXPXGSXGGXXXRGGXGXGXXGGX 875
G GG G SG P PG G G G G G GG G G GG
Sbjct: 189 GFGGFGGG-SGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247
Query: 876 GXXXGG 893
G GG
Sbjct: 248 GGGLGG 253
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 240 VRVHRANTGRSSNELDRQTTELERR 314
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 164 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 66
Y ES + D+ + SH+ A +I Q R+G R
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = -3
Query: 895 PPPXXQPXPPXNPXPXPPRXXXPPXXPXGXXRXPXNHPDEHXPAXXXGPRXPGXG 731
PP P PP P PP PP P G P + P PA P P G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP-MPAG----PPSAPPPPLPA-SSAPSVPNPG 1747
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Frame = -3
Query: 895 PPPXXQPXPPXNPXPXPPRXXXPPXXP-----XGXXRXPXNHPDEHXPA-XXXGPRXPGX 734
PPP QP P P PP P N PD++ + P P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPT 226
Query: 733 GXPER--XXPEPPXPHAATL 680
P++ P PP P TL
Sbjct: 227 YTPKQADPLPAPPPPPPPTL 246
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 892 PPXXQPXPPXNPXPXPPRXXXPPXXP 815
PP P PP P PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 810 PXGSXGGXXXRGGXGXGXXGGXGXXXGG 893
P G+ G RGG G G GG G GG
Sbjct: 127 PKGARNGPAGRGGRG-GFRGGRGGSRGG 153
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 795 GXRWXPXGSXGGXXXRGGXGXGXXGGXGXXXGGG 896
G R P G G RGG G G GG G GG
Sbjct: 129 GARNGPAGRGGRGGFRGGRG-GSRGGFGGNSRGG 161
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = -3
Query: 895 PPPXXQPXPPX-NPXPXPPRXXXPPXXPXGXXRXPXNHPDEHXPAXXXGPRXP 740
PPP PP + P P PP P + P + P P+ P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 777 SSGWXXGXRWXPXGSXGGXXXRGGXGXGXXGGXGXXXGG 893
S G G R G GG RGG G G G G GG
Sbjct: 7 SRGGRGGSRGGRGGFNGG---RGGFGGGRGGARGGGRGG 42
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 46 MSTTYIILLPFLLTCAIASAAECENATSLS 135
+S TYIILLPF C A +++ +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,320
Number of Sequences: 5004
Number of extensions: 58507
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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