Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_C04
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 30 2.0
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 30 2.7
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 29 4.7
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843 29 4.7
09_04_0394 - 17261008-17262476,17262554-17262743 29 6.2
08_02_0779 - 21128736-21128945 29 6.2
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 29 6.2
04_03_0639 + 18247768-18248196 28 8.2
03_05_0667 + 26582679-26583074 28 8.2
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 8.2
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 KLRGEFLKETKVCT-IISPRPGTSTDGDEAQDTLVTKQGIQTDL 421
+L + ++ K C +++P PG S D D A D V K+G+ +++
Sbjct: 478 ELASDGARQEKFCIDLMAPPPGKSPDRDGASDPDVDKKGLDSEM 521
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +3
Query: 555 NSGRLRCRWCPATGTTWCSGSPRSGSQYGSRARCGTRWRP 674
N+G C W G WC + + G S A T RP
Sbjct: 290 NTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRP 329
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 685 PEPLGRHRVPQRAREPYCDPDLGEPEHQVVPVAGHHRH 572
P PL R + + PY EP P AG HRH
Sbjct: 115 PSPLARTVMTRADDHPYQSYSHSEPPSPAAPHAGDHRH 152
>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
Length = 588
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 502 EADQAHARL-VQLRQVHGPRVHRSV-SVQQIRLNSLFSDKRILGFISVG*GSGTGRY 338
E D ARL V L Q+ P+ R + SV+ L++ FSD+ +GF S T Y
Sbjct: 167 EYDAGDARLDVTLHQLTKPKPARPLLSVKPANLSAAFSDQMYVGFSSSTGSDDTSHY 223
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 19 IVADRVLLGRGVSPSQ-HPLGESKVPVQVVPGLRYLQPHQLLVVGSRGPYNEH-R*YFCR 192
+V + LGRG S + LG K+ G+R V Y + + +FC
Sbjct: 217 LVHNLTQLGRGSEHSYANLLGAKKIKTDDPAGVRSESLPSYAYVHLEHDYQQSDQLFFCD 276
Query: 193 EEDLLPAHIQWLLRRSTLH 249
++ + A + WL+ RS L+
Sbjct: 277 DDQTVLAKVNWLILRSNLY 295
>08_02_0779 - 21128736-21128945
Length = 69
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Frame = +1
Query: 211 AHIQWLLRRSTLHR-------CRVLPHLRS*SIL*APR 303
AH+ +L RRS+L R C++ P+LR S+ APR
Sbjct: 7 AHVSYLRRRSSLERGEAMHQRCQIRPYLRRSSVRSAPR 44
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 571 GAGGVPQLARPGVPARRDRG-RSMVPVRAVELDGARAALAPEPRAG 705
GAGG P+ A P P RR G R+ P R A A + P AG
Sbjct: 34 GAGGGPRRAVPQPPVRRPSGDRACTPWRGGVGAAAPAPVTPVAAAG 79
>04_03_0639 + 18247768-18248196
Length = 142
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 552 ANSGRLRCRWCPATGTTWCSGSPRSGSQYGSRARCG 659
A+ GRL G W SG+P G + ARCG
Sbjct: 12 ASRGRLAAAARGRRGVAWRSGAPAVGREATMLARCG 47
>03_05_0667 + 26582679-26583074
Length = 131
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 565 D*GAGGVPQLARPGVPARRDRGRSMVPVRAVELDGA 672
D GAGG A G PA RGR P+ +E DGA
Sbjct: 90 DAGAGGKKADAGAGAPAAW-RGRGTAPLGRIEEDGA 124
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -1
Query: 661 VPQRAREPYCDPDLGEPEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQYEH---QREADQ 491
+P + P L P+H+ P H +S P+ A + Q+ Q++H Q++ Q
Sbjct: 1 MPLQQTPPNVSAPLRPPQHRPHPRPYHAPAISHPQNALLTQQQQKLPQHQHLQQQQQQQQ 60
Query: 490 AHARLVQLRQVHGPRVHRSVSVQQIRL 410
+L Q +Q ++ + QQ +L
Sbjct: 61 QQQKLQQQQQQQQQKLQQQQQQQQQKL 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,541,948
Number of Sequences: 37544
Number of extensions: 416017
Number of successful extensions: 1592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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