Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_C01
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0606 + 4543031-4543177,4543287-4543709,4543836-4543952,454...    30   3.1  
12_01_0524 - 4167867-4168445                                           29   7.1  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   9.3  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   9.3  

>02_01_0606 +
           4543031-4543177,4543287-4543709,4543836-4543952,
           4544064-4544423
          Length = 348

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 419 HGRGERSPRPVXAAAFSSTTSGLHKRSRGHQPSXAAPLPCVP 294
           H  G+  P P+ +AA +S  SG       H P+ A P P VP
Sbjct: 248 HNHGQPPP-PLQSAAQNSDGSGKSAGKPPHAPAAAPPAPVVP 288


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -2

Query: 329 QPSXAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 150
           QPS AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 149 CEERVDHEGQ*C 114
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 236 VHRANTGRSSNELDRQTTELERRGVG 313
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 65  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 205
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,458
Number of Sequences: 37544
Number of extensions: 376866
Number of successful extensions: 1018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)