Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_C01
(939 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 38 0.010
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 38 0.010
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 38 0.014
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.014
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.014
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.014
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 38 0.014
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 37 0.024
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 36 0.055
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 35 0.073
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 35 0.097
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 35 0.097
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 35 0.097
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 33 0.22
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 33 0.22
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 33 0.22
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.22
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 33 0.22
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 33 0.29
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.39
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 32 0.51
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 32 0.51
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 32 0.68
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 31 0.90
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 31 0.90
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 31 0.90
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 31 0.90
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 1.2
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z99281-29|CAH04731.2| 438|Caenorhabditis elegans Hypothetical p... 30 2.1
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 30 2.7
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 30 2.7
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 29 3.6
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 29 3.6
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 29 4.8
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 29 4.8
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 4.8
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 29 4.8
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 29 6.3
Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical p... 29 6.3
Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical pr... 29 6.3
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 29 6.3
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z67735-2|CAA91530.2| 403|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRI 251
T +A +E +S S + LL +++ SPPD ++ ++ + L H I E +++
Sbjct: 56 TVGVAEFSEQYQGSS-SRLTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQV 114
Query: 252 QADLQMNWIDKRLSWNAGEW-GC-XTWL 329
+ W D LSW E+ G TWL
Sbjct: 115 LVYIVQQWTDASLSWKVEEFRGIKHTWL 142
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 153 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 311
YD ++P + L +L+ ++E + + + ++ W D RLSWNA W
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAW 115
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CXTWL 329
+G TW+
Sbjct: 130 LFGGITKTWI 139
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CXTWL 329
+G TW+
Sbjct: 130 LFGGITKTWI 139
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CXTWL 329
+G TW+
Sbjct: 130 LFGGITKTWI 139
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CXTWL 329
+G TW+
Sbjct: 130 LFGGITKTWI 139
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CXTWL 329
+G TW+
Sbjct: 130 LFGGITKTWI 139
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CXTWL 329
+G TW+
Sbjct: 130 LFGGITKTWI 139
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 36.7 bits (81), Expect = 0.024
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 153 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 311
YD D+P + L +L+ + E E V + +L W D RLSWNA ++
Sbjct: 65 YDPDAPQRYNYTLFL-YNLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNASDY 116
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 35.5 bits (78), Expect = 0.055
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +3
Query: 90 SAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQM 269
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 270 NWIDKRLSWNAGEWGCXTWL 329
+W D +SW+ +WG +WL
Sbjct: 114 SWNDTMVSWDKEQWG-LSWL 132
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 35.1 bits (77), Expect = 0.073
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 120 LSLMIDSLLATYDRDSPP----DSKIVVNLTLHL-RHANIRESESTVRIQADLQMNWIDK 284
+S ++++LL Y++ P + V +L R ++ E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 285 RLSWNAGEWG 314
+L+WN +WG
Sbjct: 89 KLTWNPTDWG 98
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 34.7 bits (76), Expect = 0.097
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 293
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 294 WNAGEWG 314
W+ +G
Sbjct: 90 WDPVNYG 96
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 34.7 bits (76), Expect = 0.097
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 293
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 294 WNAGEWG 314
W+ +G
Sbjct: 90 WDPVNYG 96
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 34.7 bits (76), Expect = 0.097
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 293
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 294 WNAGEWG 314
W+ +G
Sbjct: 90 WDPVNYG 96
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 105 ENATSLS-LMIDSLLATYDRDSPPDSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWI 278
E+A L+ L I +A+ + + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 279 DKRLSWNAGEW 311
D RL WN W
Sbjct: 93 DDRLMWNQDTW 103
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.22
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 186 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 299
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.22
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 186 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 299
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSK--IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 293
+I+ L++ Y R+ P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 294 W 296
W
Sbjct: 85 W 85
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.22
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCXT 323
++ E + + ++ L +W+D RLSWN E+G T
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNIT 78
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 33.1 bits (72), Expect = 0.29
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +3
Query: 93 AAECENATSL----SLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA-NIRESESTVRI 251
A CEN +L S +++ + YDR P ++VN+T+ L ++E++
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 252 QADLQMNWIDKRLSWNAGEWGCXTWLVSSRTLV 350
W D RLSW+ ++ ++ +T+V
Sbjct: 117 VISHTQRWYDGRLSWDPSKYRGQREVIVPQTMV 149
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 168 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
PP +I + L++ ++ + E E D + +W D RLSW+ ++G
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 99 ECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVRIQADL 263
E + T + D L+ YD P + +++N++++ + +E T+ ++
Sbjct: 21 EVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTLDPAEETINFSSEF 80
Query: 264 QMNWIDKRLSWNAGEWGCXTWL 329
+ W D+ L WN ++ TWL
Sbjct: 81 ILQWKDEFLFWNKSDYN-ITWL 101
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 32.3 bits (70), Expect = 0.51
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 195 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 302
L +L+ ++E E V + +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 32.3 bits (70), Expect = 0.51
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 207 LRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
+R ++ E + L+M W D RL W+ G WG
Sbjct: 59 IRIIDVDEVNQVLTTNLWLEMQWFDYRLMWDPGRWG 94
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 168 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
PP +++ + + + L+ ++ E E V D W D+RL WN E+G
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYG 98
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 31.9 bits (69), Expect = 0.68
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSK----IVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLS 293
+I+++ YD+ P ++ ++V++T+ L +RE++ W D +L+
Sbjct: 44 LIETIQRRYDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLA 103
Query: 294 WNAGEWGCXTWLVSSRTLV 350
WN + T +V R+LV
Sbjct: 104 WNPADHSGLTQVVMPRSLV 122
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 31.5 bits (68), Expect = 0.90
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRESES 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWGCXT 323
V + A L W D L W+ E+G T
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNIT 95
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 31.5 bits (68), Expect = 0.90
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRESES 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWGCXT 323
V + A L W D L W+ E+G T
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNIT 95
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 31.5 bits (68), Expect = 0.90
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRESES 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWGCXT 323
V + A L W D L W+ E+G T
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNIT 95
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 31.5 bits (68), Expect = 0.90
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHA-----NIRESES 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWGCXT 323
V + A L W D L W+ E+G T
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNIT 95
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 153 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 302
YD D+P + L L+ + E V + ++ W D RLSWNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 228 ESESTVRIQADLQMNWIDKRLSWNAGEW 311
E + ++ L +NW+D RLSWN W
Sbjct: 154 ERNQALTTRSWLNINWMDPRLSWNESLW 181
>Z99281-29|CAH04731.2| 438|Caenorhabditis elegans Hypothetical
protein Y57G11C.49 protein.
Length = 438
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 99 ECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLH-LRHANIRESESTVRIQADL 263
E + T + D L+ YD P + +N++++ + + +E T+ +
Sbjct: 21 EIDGITVSEQLKDVLMEGYDSSIRPVINERDTLFINISINSMSFLTLDPAEETINFSGEF 80
Query: 264 QMNWIDKRLSWNAGEWGCXTWL 329
+ W D+ L WN ++ TWL
Sbjct: 81 ILQWKDEFLFWNKSDYN-ITWL 101
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 189 VNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNAGEWGCXTWLVSSRTL 347
VN+ L + H + E E T + + WID+ + W+A + +S+ +L
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDAKKENVTKLTISAHSL 107
>Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical
protein C40C9.2 protein.
Length = 534
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 183 IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
+VV++ ++L+ ++ E + + A ++ W D +L W+ E+G
Sbjct: 53 LVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTDYKLKWDPSEYG 97
>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 361 RQASTSVLEDTSQVXQPHSPAFQLSRLSIQFI*RSACIRTVDSDS 227
+ STS++++ S V P +P F+ IQ + +RT+ +DS
Sbjct: 116 KDGSTSLIKEESVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDS 160
>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 361 RQASTSVLEDTSQVXQPHSPAFQLSRLSIQFI*RSACIRTVDSDS 227
+ STS++++ S V P +P F+ IQ + +RT+ +DS
Sbjct: 116 KDGSTSLIKEESVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDS 160
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 243 VRIQADLQMNWIDKRLSWNAGEW 311
+ I L+++W D+RL WN EW
Sbjct: 101 MNINGFLKLSWKDRRLRWNPEEW 123
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 243 VRIQADLQMNWIDKRLSWNAGEW 311
+ I L+++W D+RL WN EW
Sbjct: 101 MNINGFLKLSWKDRRLRWNPEEW 123
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 195 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 299
L +L+ ++E V + +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 293
+ + L+A Y++ P S+ +VV L L ++ E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 294 WNAGEWG 314
W+ E+G
Sbjct: 90 WDPVEYG 96
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 293
+ + L+A Y++ P S+ +VV L L ++ E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 294 WNAGEWG 314
W+ E+G
Sbjct: 90 WDPVEYG 96
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
N+ E ++ L M W D +L+WN E+G
Sbjct: 99 NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYG 130
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
N+ E ++ L M W D +L+WN E+G
Sbjct: 99 NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYG 130
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 99 ECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRE-SESTVRIQADLQMN- 272
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 273 -WIDKRLSW 296
W D RLS+
Sbjct: 68 IWQDPRLSF 76
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 84 IASAAECENATSLSLMIDSLLATYDRD-SPPDSKIVVNLTLH-LRHANIRESESTVRIQA 257
+ + A E + + +L+ TYD D P D +V +T + ++ +++ T++
Sbjct: 17 LTAVAFLETSNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSMDQTQETIQYSE 76
Query: 258 DLQMNWIDKRLSWN 299
+ + W D L WN
Sbjct: 77 EFLLRWYDPILHWN 90
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 201 LHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNAGEW 311
LH+ H + I++ + +++ W+D+RL WN +
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWNPSNY 99
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 270 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 305
>Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 39 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 74
>Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 37 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 72
>Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 95 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 130
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 270 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 305
>Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 39 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 74
>Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 37 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 72
>Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 382 QPRLAVPRQASTSVLEDTSQVXQPHSPAFQLSRLSI 275
+PR VPR ST L D +V ++ FQ S LS+
Sbjct: 95 EPRDTVPRCHSTQSLRDVQRVRSYNNSQFQASDLSL 130
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 183 IVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCXT 323
++V + L L+ ++ E V + A L+ +W+D L W ++G T
Sbjct: 51 VMVKMGLVLQQIVDVDEKNQVVDVNAWLKFSWVDYSLKWKPEDYGGVT 98
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 153 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 311
+D D+P + L L+ + E + V + ++ W D RL+WN ++
Sbjct: 65 HDPDAPGRWNYTL-LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWNKEDY 116
>Z67735-2|CAA91530.2| 403|Caenorhabditis elegans Hypothetical
protein C15A7.1 protein.
Length = 403
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 135 DSLLATYDRDSPPDSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWNAGEW 311
+ +L D P + + + L L H + + E + + ++ W D+RL W+ +
Sbjct: 39 EDVLGPLDGSMPSELPVFIGAQLKLDHISRVDEKTGFLTLALTVKFMWSDERLQWDPSHY 98
Query: 312 GCXT 323
T
Sbjct: 99 SGFT 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,915,101
Number of Sequences: 27780
Number of extensions: 268491
Number of successful extensions: 914
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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