Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_C01
(939 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 8e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 33 0.005
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.046
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.046
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.046
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.046
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.046
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.046
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.046
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.046
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.11
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.14
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.25
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.25
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.25
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.25
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.25
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.43
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 26 0.57
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 0.99
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 7.0
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 7.0
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 7.0
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 7.0
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 7.0
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 7.0
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 7.0
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 7.0
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 7.0
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 7.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 38.7 bits (86), Expect = 8e-05
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 102 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 266
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 267 MNWIDKRLSWNAGEW 311
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 108 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 275
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 276 IDKRLSWNAGE 308
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 32.7 bits (71), Expect = 0.005
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +3
Query: 84 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 242
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 243 VRIQADLQMNWIDKRLSWNAGEWGCXTWL 329
+ L+ W D + W+ E+G T L
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTEL 95
Score = 25.8 bits (54), Expect = 0.57
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 328 WCPRERLWRPDVVLLNAA 381
+ P E +W PD+VL N A
Sbjct: 96 YVPSEHIWLPDIVLYNNA 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 67 KLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 135 KLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.046
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 23.4 bits (48), Expect = 3.0
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1
Query: 343 RLWRPDVVLLNAA 381
+LW+PD+++ N+A
Sbjct: 135 KLWKPDILMYNSA 147
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 28.3 bits (60), Expect = 0.11
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 233
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 234 ESTVRIQADLQMNWIDKRLSWNAGEWG 314
T + ++ W D +L WN ++G
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYG 90
Score = 25.4 bits (53), Expect = 0.75
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P E +W PD+VL N A
Sbjct: 98 PSEHIWLPDIVLYNNA 113
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.14
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 287
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 288 LSWN 299
L +N
Sbjct: 95 LRFN 98
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.25
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P + +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
Score = 23.0 bits (47), Expect = 4.0
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 293
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 294 WNAGEWG 314
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.25
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P + +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
Score = 23.0 bits (47), Expect = 4.0
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 293
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 294 WNAGEWG 314
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.1 bits (57), Expect = 0.25
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P + +WRPD+VL N A
Sbjct: 102 PSDHIWRPDIVLYNNA 117
Score = 25.8 bits (54), Expect = 0.57
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +3
Query: 102 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 260
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 261 LQMNWIDKRLSWNAGEWG 314
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.1 bits (57), Expect = 0.25
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P RLW+PDV++ N+A
Sbjct: 101 PPHRLWKPDVLMYNSA 116
Score = 24.6 bits (51), Expect = 1.3
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 245
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 246 RIQADLQMNWIDKRLSWNAGEWG 314
L++ W D + WN ++G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.1 bits (57), Expect = 0.25
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 310 GAAXLGWCPRERLWRPDVVLLNAA 381
G + + P E +W PD+VL N A
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA 126
Score = 26.2 bits (55), Expect = 0.43
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 287
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 288 LSWNAGEWG 314
L WN E+G
Sbjct: 95 LKWNPEEYG 103
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.43
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 180 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 314
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
Score = 26.2 bits (55), Expect = 0.43
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P +++W+PD+VL N A
Sbjct: 104 PPDKVWKPDIVLFNNA 119
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.57
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 334 PRERLWRPDVVLLNAA 381
P R+WRPD +L N A
Sbjct: 83 PYNRVWRPDTILYNNA 98
Score = 25.0 bits (52), Expect = 0.99
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 183 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 311
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 25.0 bits (52), Expect = 0.99
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 105 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 272
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 273 WIDKRLSWNAGEW 311
W D LSW ++
Sbjct: 99 WTDSHLSWKPSDF 111
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 7.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 340 ERLWRPDVVLLN 375
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.2 bits (45), Expect = 7.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 333 TPAKXCSPTPLRSNSVVCRSNSFED 259
TP + + PL + V CR+N E+
Sbjct: 26 TPRRKKNKKPLPTECVFCRNNGEEE 50
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLGSRSRSFQ 225
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 339 SRTPAKXCSPTPLRSNSVVCRSNSFE 262
S K C + SNS+ RS SF+
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQ 225
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,764
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 55
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -