Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_B24
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   2.6  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   4.5  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    26   6.0  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   7.9  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 459 LSDSWITILPSDVQHCLRPVFVSTQKQHHGGTSSRIQTGINSLWFYMGDL 310
           L +S +   P +++H  + +F +    HH G   R   G N L    GDL
Sbjct: 364 LLNSQLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDL 413


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 480 VSIFRRALSDSWITILPSDVQHCLRPVFVSTQKQHHGGTSSRIQTGINSLWFYM 319
           +S F     DSWI ILP  +   ++  FV+        +   IQ  +N+L  Y+
Sbjct: 831 ISPFLEIKKDSWILILPPSIVDMVKSYFVTNNPDK---SLLEIQNLLNTLQRYL 881


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 423 VQHCLRPVFVSTQKQHHGGTSSRIQTGINSLW 328
           ++  LR  F++ + +HH  TSS I T  +S+W
Sbjct: 322 IEELLRDPFLTERGKHHL-TSSSIVTAFSSIW 352


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 574 TAILWFSRLQQTITRRWCHRVLI 506
           T  L+F  ++    RRWCH   I
Sbjct: 4   TLFLYFDAIRHANQRRWCHECTI 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,649
Number of Sequences: 5004
Number of extensions: 53316
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)