Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_A01
(924 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 44 3e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 41 1e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 40 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 2e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 37 2e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 27 0.32
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 0.73
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 9.0
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 43.6 bits (98), Expect = 3e-06
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V++NGS
Sbjct: 108 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSC 167
Query: 450 SWI 458
++
Sbjct: 168 LYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 43.6 bits (98), Expect = 3e-06
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V++NGS
Sbjct: 108 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSC 167
Query: 450 SWI 458
++
Sbjct: 168 LYV 170
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V++NGS
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSC 99
Query: 450 SWI 458
++
Sbjct: 100 LYV 102
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V+++GS
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99
Query: 450 SWI 458
++
Sbjct: 100 LYV 102
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V+++GS
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99
Query: 450 SWI 458
++
Sbjct: 100 LYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V+++GS
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99
Query: 450 SWI 458
++
Sbjct: 100 LYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V+++GS
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99
Query: 450 SWI 458
++
Sbjct: 100 LYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W+D L WN E+ G ++ + W+P +++ N+A DG Y V+++GS
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99
Query: 450 SWI 458
++
Sbjct: 100 LYV 102
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 41.1 bits (92), Expect = 1e-05
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERXWRPXVVLXNAAAXTDGDY----XXRARVSNN 440
+ W D +L WN E+G L V SE W P +VL N A DG+Y +A +
Sbjct: 87 EQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYT 143
Query: 441 GSVSW 455
G VSW
Sbjct: 144 GDVSW 148
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 40.3 bits (90), Expect = 2e-05
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERXWRPXVVLXNAA-AXTDGDYXXRARVSNNGSV 449
++ W D + WN ++G L + R W+P V++ N+A DG Y V NNG+
Sbjct: 77 KLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTC 136
Query: 450 SWI 458
++
Sbjct: 137 LYV 139
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 7e-05
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERXWRPXVVLXNAAAXTDGDY----XXRARVSNN 440
+ +W D +L W E+G L V S+ WRP +VL N A DG+Y +A V +
Sbjct: 82 EQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYS 138
Query: 441 GSVSW 455
G V W
Sbjct: 139 GLVVW 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERXWRPXVVLXNAAAXTDGDY----XXRARVSNN 440
+ +W D +L W+ E+G L V S+ WRP +VL N A DG++ +A ++
Sbjct: 78 EQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA---DGNFEVTLATKATLNYT 134
Query: 441 GSVSW 455
G V W
Sbjct: 135 GRVEW 139
Score = 23.0 bits (47), Expect = 3.9
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +2
Query: 764 CXAHGGPAXXXPPPXXP 814
C HG PA PP P
Sbjct: 442 CRIHGSPATTAAPPQLP 458
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 38.7 bits (86), Expect = 7e-05
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAAAXTDGDY----XXRARVSNN 440
+ W D +L WN ++ G T V SE W P +VL N A DG+Y +A + +
Sbjct: 74 EQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHT 130
Query: 441 GSVSW 455
G V W
Sbjct: 131 GKVVW 135
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.3 bits (85), Expect = 1e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWL-VSSERXWRPXVVLXNAAAXTDGDY----XXRARVSNN 440
+ +W D +L W E+G L V S+ WRP +VL N A DG++ +A + +
Sbjct: 82 EQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNFEVTLATKATIYHQ 138
Query: 441 GSVSW 455
G V W
Sbjct: 139 GLVEW 143
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.1 bits (82), Expect = 2e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +3
Query: 231 NIRESXSXXRILADXQMNWIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAAAXTDG 407
N+ E + + W D +L W+ ++ G + ++ W+P +VL N A DG
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNA---DG 121
Query: 408 DYXXRAR----VSNNGSVSWI 458
+Y R + + NG V W+
Sbjct: 122 NYEVRYKSNVLIYPNGDVLWV 142
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 285 WIDKRLSWNAGEW-GCSTWLVSSERXWRPXVVLXNAA--AXTDGDYXXRARVSNNGSVSW 455
W D L WNA E+ G V R WRP +L N A + VS+ G V W
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
Query: 456 I 458
+
Sbjct: 122 L 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 26.6 bits (56), Expect = 0.32
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWLVSSERXWRPXVVLXN 386
+ +W+D+RL++ G+ + + R W+P N
Sbjct: 58 RQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.4 bits (53), Expect = 0.73
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWLVSSERXWRPXVVLXN---AAAXTDGDYXXRARVSNNGS 446
+ +W D RLS+ S + ER WRP N + T R+S +G
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGD 149
Query: 447 VSWIKRLDI 473
+ + RL I
Sbjct: 150 ILYSMRLTI 158
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 338 PSAAAPFPCVPTQS 297
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,672
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 34
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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