Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P24
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 36 0.052
04_01_0377 - 4970034-4970687 35 0.068
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 34 0.16
02_05_1205 + 34939062-34939919 34 0.16
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 33 0.36
02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263 31 0.84
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 31 1.1
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 31 1.5
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 30 2.6
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 29 3.4
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 29 4.5
02_04_0452 + 23044190-23045227 29 4.5
01_01_0491 + 3629025-3629051,3629679-3629778,3629947-3630015,363... 29 4.5
04_04_1523 - 34148407-34150224 29 5.9
04_03_0130 - 11622139-11623325,11626144-11627116 29 5.9
02_02_0030 - 6207784-6208154,6208286-6211310 29 5.9
11_06_0368 + 22756988-22758205 28 7.8
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 7.8
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 28 7.8
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 7.8
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 35.5 bits (78), Expect = 0.052
Identities = 23/64 (35%), Positives = 26/64 (40%)
Frame = -1
Query: 427 RCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGT 248
RC SH N + N+ NV Y C G C N S C C G + NGT
Sbjct: 70 RCNCSHGYEGNPYIKDGCEDINECLDNVTYP-CPGICNNTMGSF--TCSCHQGNYMENGT 126
Query: 247 CIRN 236
CI N
Sbjct: 127 CIPN 130
>04_01_0377 - 4970034-4970687
Length = 217
Score = 35.1 bits (77), Expect = 0.068
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 331 CDGACENGRCSLDGACECDSGYILSNGTCIRNNTACS--ANCSAGGEECGLGSGCPS 167
C C+NG C D C + +NG NN CS C G E C G+GC S
Sbjct: 92 CGSGCQNGPCRADIKCGRN-----ANGELCPNNMCCSQWGYCGLGSEFC--GNGCQS 141
Score = 35.1 bits (77), Expect = 0.068
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -1
Query: 331 CDGACENGRCSLDGACECDSGYILSNGTCIRNNTACSAN--CSAGGEECGLGSGCPSEQT 158
C C++G C + C +G G NN CSA C GG CG SGC S
Sbjct: 135 CGNGCQSGACCPEKRCGKQAG-----GDKCPNNFCCSAGGYCGLGGNYCG--SGCQSGGC 187
Query: 157 HFPAEVTSAGLAGLQ 113
+ + +A LA Q
Sbjct: 188 YKGGDGMAAILANNQ 202
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 343 CYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTA-CSANCSAGGEEC 191
C KC G +G C +G CEC+SG+ T I +TA C CS G C
Sbjct: 568 CPAKCTG---HGICKANGICECESGW-----TGIDCSTAVCDEQCSLHGGVC 611
>02_05_1205 + 34939062-34939919
Length = 285
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/79 (32%), Positives = 34/79 (43%)
Frame = +2
Query: 299 RAPAIFASSIAFLVTNVRIRIVTLVVFEARARIRG*TVRVHAALRTDRQADERILGTQPV 478
RAP F VT + +V+ V A + RG T R AAL+ R R G V
Sbjct: 102 RAPRRFGGDAVLGVTRI---VVSTFVGSASSSARGTTGRQVAALQLRRPRSLRPQGIVNV 158
Query: 479 AIVARALIGLRARPICAGP 535
A+ RA P+C+ P
Sbjct: 159 AVAVLDATDARAVPLCSSP 177
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -1
Query: 433 SERCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSL-DGACECDSGYILS 257
+ CVNS +C+C + YE N N C + C+L + + Y
Sbjct: 588 NSHCVNSSNGMGYSCSCNQGYEGNPYLDNGCQ-------DIDECTLRRQGRQYEDVYPCK 640
Query: 256 NGTCIRNNTACSANCSAGGEECGLGSGC 173
+G CI + C AG + G GC
Sbjct: 641 HGICINTPGSYRCKCKAGTKPDGTNFGC 668
>02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263
Length = 297
Score = 31.5 bits (68), Expect = 0.84
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Frame = -1
Query: 472 LSPEDPFVCLPVCSER----CVNSHCSSPNTCTCFKDYERND----TNSNVCYKKC---- 329
LSP D C+ R C N++ +S C+ Y+ D ++ Y+KC
Sbjct: 101 LSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSST 160
Query: 328 --DGACENGRCSLDGACECDSGYILSNGTCIRNNTACSANCSA 206
DGA + R + G + +GY LS ++ C + A
Sbjct: 161 SRDGAFLSSRDGVLGELQAAAGYKLSTSGTVQGVAQCLGDVPA 203
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = -1
Query: 499 KCTCDDGYRLSP------EDPFVCLPVCSERCVNSHCSSPNT--CTCFKDYERNDTNSNV 344
KC C DGY+ +P D C C + ++P + C C + YERN + N
Sbjct: 294 KCHCSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGYERNASTPNG 353
Query: 343 C 341
C
Sbjct: 354 C 354
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/64 (32%), Positives = 26/64 (40%)
Frame = -1
Query: 427 RCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGT 248
RC SH N + N+ N Y C G C+N S D C C G + NG
Sbjct: 40 RCKCSHGYEGNPYIKDGCKDINECLDNATYP-CMGICKNTIGSFD--CSCYPGSYMKNGF 96
Query: 247 CIRN 236
C+ N
Sbjct: 97 CLPN 100
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -1
Query: 400 PNTCTCFKD-YERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTAC 224
PN C YE +D+ + + C NG SL A + + +NG N +
Sbjct: 744 PNDSNCESGKYENSDSLQDASPAELSEVCYNGNGSLQDASPAELSEVSNNG----NGSLQ 799
Query: 223 SANCSAGGEECGLGSG 176
A+ S E C G+G
Sbjct: 800 DASSSELSEVCNNGNG 815
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 29.5 bits (63), Expect = 3.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Frame = -1
Query: 523 NGACSEPD--KCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTNS 350
NG ++ D +C C DGY +P C + C SP+ C+ D +
Sbjct: 194 NGTTADYDGYRCYCSDGYEGNPYVDGGCRDI-------DECKSPHIYPCYGDCKNTRGGY 246
Query: 349 NV-CYK--KCDGACENGRCSLDGACECDSGYILSNGTCIRNNTACSANCSAG--GEECGL 185
+ C+ K + + NG C C Y G CI A C G G+
Sbjct: 247 DCQCHHGYKGNASILNG-CQDINECAEPEKYSCYGGLCINTPGAFVCRCHDGSYGDPFTK 305
Query: 184 GSGCPSEQ 161
G GC S +
Sbjct: 306 G-GCRSSK 312
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 427 RCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGT 248
+C + + +P KD N+ N Y C G C+N + C C G + NG
Sbjct: 296 KCSDGYEGNPYVKDGCKDI--NECLDNATYP-CPGICKNTLGNF--TCSCYPGNYMMNGI 350
Query: 247 CIRN 236
CI N
Sbjct: 351 CIPN 354
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 225 HAVLFLMHVPLDSMYPESHSHAPSKEHRPFSQAPS 329
H L L H + SHSH+ S+ H P ++ P+
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPT 200
>01_01_0491 +
3629025-3629051,3629679-3629778,3629947-3630015,
3630282-3630559
Length = 157
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 430 ERCVNSHCSSPNTCTCFKDYER 365
ERC++S S C CFK +R
Sbjct: 17 ERCISSQAESDGYCACFKGLQR 38
>04_04_1523 - 34148407-34150224
Length = 605
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 421 VNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGAC 317
+N CS+P C KD+E D + V C +C
Sbjct: 97 INRSCSTPCLCPVSKDFEHKDRSGLVEMLGCSISC 131
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = -1
Query: 496 CTCDDGYR----LSPEDPFVCLPVCSERCV 419
C C G+R L PEDP C +CS V
Sbjct: 303 CNCSKGFRGNPYLHPEDPSSCQGICSSTVV 332
>02_02_0030 - 6207784-6208154,6208286-6211310
Length = 1131
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 526 TNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSE 428
+NG + D YRL DP LP+C E
Sbjct: 725 SNGVFGNASRAILDGNYRLCVNDPGYSLPLCRE 757
>11_06_0368 + 22756988-22758205
Length = 405
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -1
Query: 511 SEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSH-CSSP 398
S P++ Y P DP C CS CV H C SP
Sbjct: 35 SAPERDQTAAPYGTVPPDPLSCATDCSPDCVFYHLCPSP 73
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 28.3 bits (60), Expect = 7.8
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Frame = -1
Query: 520 GACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERND------ 359
G S C + P + + C+ SE CVNS C C K YE N
Sbjct: 252 GNSSASSSCPAPEVREKMPPE-YACVSDNSE-CVNSTNGPGYYCKCSKGYEGNPYLVGGC 309
Query: 358 TNSNVCYKK----CDGACENGRCSLDGACECDSGY 266
+ + C + C G C N D C+C +GY
Sbjct: 310 NDIDECARSDEYPCHGDCRN--TVGDYHCKCRTGY 342
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 493 TCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERN 362
+C++ ++ D + C SE C NS TC C K YE N
Sbjct: 250 SCEEAWKKM--DSYACKSTNSE-CFNSTNGPGYTCNCSKGYEGN 290
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 271 RSRTRTLRPKSTGHFRKLHRISCNKRSNSYRYARSL*STCTY*GMNSESSRSAQNRPAGR 450
RSR+R+ R S + R R + RS + +RS + T N +SRS P
Sbjct: 595 RSRSRS-RSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYT---RNRRASRSRSRSPGAS 650
Query: 451 RKDPRDSTGS 480
R+ R +TGS
Sbjct: 651 RRHERSATGS 660
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,620,338
Number of Sequences: 37544
Number of extensions: 465490
Number of successful extensions: 1473
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -