Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P23
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 31 0.22
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 29 0.87
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.5
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 1.5
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 27 2.7
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 3.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 4.6
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 6.1
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 6.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 6.1
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -3
Query: 142 LLTGHEDGSVRFWDV-TGVAMTPLYKYTTAQLFS 44
++TG +DGSV WDV TGV++ +++ ++Q+ S
Sbjct: 238 MVTGSDDGSVHCWDVKTGVSLQS-FQFRSSQILS 270
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 157 TDRQVLLTGHEDGSVRFWDV-TGVAMTPLYKYTTA 56
+D Q ++TG +DG ++ WD+ +G + ++T+A
Sbjct: 349 SDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSA 383
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -3
Query: 310 HASAVTTAQLADGVAPAVYDN--IVAAGQQQTENQYSESPWPISGGVVETAELTDRQVLL 137
H+ ADG++ A D I+ ++ NQ+ S S V + D ++L+
Sbjct: 529 HSPVSALCMSADGLSLASADESGIIKVWDLRSSNQHV-SFVKHSSIVYSLSFSYDNKILV 587
Query: 136 TGHEDGSVRFWDVT 95
+G D V FWD+T
Sbjct: 588 SGGADTDVNFWDLT 601
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 211 YSESPWPISGGVVETAELT-DRQVLLTGHEDGSVRFWDVT 95
+ ESP P V T + D + L+TG ED ++ WD++
Sbjct: 351 HEESPDPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLS 390
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 160 LTDRQVLLTGHEDGSVRFWDVTGVAMTPLYKYT 62
L + +LL+G D S+ WDV+ LYK T
Sbjct: 141 LEEEGLLLSGSTDASLIVWDVSSQPSRLLYKLT 173
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 175 VETAELTDRQVLLTGHEDGSVRFWD-VTG 92
V L+ VL+TG +D +VR WD VTG
Sbjct: 438 VTALALSSDDVLITGADDKTVRQWDIVTG 466
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 166 AELTDRQVLLTGHEDGSVRFWD 101
+E + + +TGH DG +R W+
Sbjct: 2445 SEWLHKNLFITGHPDGIIRIWE 2466
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -3
Query: 142 LLTGHEDGSVRFWD-VTG 92
L TGHEDGSV +D +TG
Sbjct: 162 LFTGHEDGSVSRYDAITG 179
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 6.1
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = -3
Query: 145 VLLTGHEDGSVRFWDVTGVAMTPLYKYT 62
++++G EDG+V+ W ++ Y ++
Sbjct: 242 IIISGSEDGTVKIWHTLSYSLIKSYNFS 269
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 154 DRQVLLTGHEDGSVRFWD 101
D ++ TG D ++RFWD
Sbjct: 188 DASIIATGSMDNTIRFWD 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,299
Number of Sequences: 5004
Number of extensions: 16069
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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