Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P23
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti...    61   9e-10
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti...    61   9e-10
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti...    61   9e-10
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform...    61   9e-10
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform...    61   9e-10
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.    61   9e-10
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo...    61   9e-10
U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    29   5.8  

>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform d protein.
          Length = 1058

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 335 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 394

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 395 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 428


>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform c protein.
          Length = 1211

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 335 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 394

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 395 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 428


>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform a protein.
          Length = 1124

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 370 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 429

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 430 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 463


>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
           protein.
          Length = 1133

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 370 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 429

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 430 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 463


>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
           protein.
          Length = 1128

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 370 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 429

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 430 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 463


>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
          Length = 1058

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 335 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 394

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 395 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 428


>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
           A protein.
          Length = 1124

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 49/94 (52%)
 Frame = -3

Query: 328 PYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDR 149
           P+ +++H S VT           +   +   G +Q   ++S   WP++GG+        +
Sbjct: 370 PHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQ 429

Query: 148 QVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++++TGH+DGS++FW  TG  +  LYK  ++  F
Sbjct: 430 ELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHF 463


>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
 Frame = -3

Query: 367 IDLCDARWRPLRLPYLVSVHASAVTTAQLADGVAPAVYDNIVAAGQQQTE-NQYSESPWP 191
           IDL       ++  + +S++ S  TT   A  +   V++ + +A +   E NQ S   WP
Sbjct: 379 IDLERESLNMMQPKHFLSINNSTPTTHSRAIEIEENVWNRLESASKSYWETNQMSTRDWP 438

Query: 190 IS--GGVVETAE---LTDRQVLLTGHEDGSVRFWDVTGVAMTPLYKYTTAQLF 47
           ++    +V  A     + RQV L+GH +G++  W   GV M+ +    T+  F
Sbjct: 439 LNFQKKIVTDANHQRASYRQVYLSGHSNGNICIWSSGGVGMSLMLVIRTSLEF 491


>Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical
           protein C54C8.6 protein.
          Length = 179

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 316 SVHASAVTTAQLADGVAPAVYDNIVAAGQQQTENQYSESPWPISG 182
           S+H S +T++ L D  AP V+ N+V  G    +  +   P+P +G
Sbjct: 28  SIHCSTLTSSGLFDSTAPRVFKNLVNYG---GDMWFYMKPYPSNG 69


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 187  SGGVVETAELTDRQVLLTGHEDGSVRFWDVT 95
            +G VV     ++ Q L+TG  D  V+ WDVT
Sbjct: 995  TGSVVSLQLTSNNQFLITGSGDFVVQMWDVT 1025


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,857,105
Number of Sequences: 27780
Number of extensions: 117578
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)