Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P23
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 130 HEDGSVRFWDVTGVAMTPLYKYT 62
           H DG +R+W    V ++    Y+
Sbjct: 275 HNDGRLRYWRTPSVVVSDYSDYS 297


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 262 AVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDRQVLL 137
           A+ D + +A        YSE  +   G  V T E T+R V +
Sbjct: 128 ALVDVVKSANWSYVSTVYSEGSYGEYGIEVFTREATERNVCI 169


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 262 AVYDNIVAAGQQQTENQYSESPWPISGGVVETAELTDRQVLL 137
           A+ D + +A        YSE  +   G  V T E T+R V +
Sbjct: 218 ALVDVVKSANWSYVSTVYSEGSYGEYGIEVFTREATERNVCI 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,521
Number of Sequences: 438
Number of extensions: 1244
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)