Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P22
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...   113   4e-26
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    29   0.79 
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   7.4  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   9.7  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   9.7  

>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  113 bits (271), Expect = 4e-26
 Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 2/159 (1%)
 Frame = -1

Query: 682 APSDMMANRXKQSKGGLVRNKLPNRVSILSXSCKFASSMYGPFRDTMKSSPMEGDRKCYQ 503
           +PSD M  R K  K  LV  +L ++V ++S S KFAS  +GPFR     +P  GDR CYQ
Sbjct: 166 SPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFASGFFGPFRAAANGAPKFGDRSCYQ 225

Query: 502 LPPGSXXXXXXXXXXXXXXXADFLMVKPGLPYLDIVRQTKDRFPHHPLFIYQVSGEYELI 323
           LP  +               AD +MVKPG PYLDI+          P+  YQVSGE+ +I
Sbjct: 226 LPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIATYQVSGEFAII 285

Query: 322 SRSGDRA--SMQTNLMEILTCMRRAGADCIITYFAPLIL 212
             +       ++ ++ME +    RAGA+ ++TYF P +L
Sbjct: 286 HAAAAAGVFELKRHVMETMDGFMRAGANIVLTYFTPELL 324


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 584 TRXRQYGHSVWQFISDQPPLGLLXPIGHH 670
           TR ++YGH VW+      PL  +  +  H
Sbjct: 564 TRMKKYGHKVWRLKQHDTPLSQIQAVTRH 592


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 197 KEVINVKYIICKWWK 153
           K V++V+  +CKWWK
Sbjct: 436 KPVLHVQEDLCKWWK 450


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 221 RSEIRYDAISARSPHAREDLHQVSLHARAVTAPRYQLVLSGYLVYEQGVVREAVLGLPHY 400
           RSE+ +   +  S HARE + +       +  P+    +SG  V    +V E   G+P Y
Sbjct: 252 RSEVDFTTEANNSEHAREGVEETDYLRDKIYIPKVYKEISGKRV----MVTEWADGIPLY 307

Query: 401 VQ 406
            Q
Sbjct: 308 DQ 309


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 622 KLPNRVSILSXSCKFASSMYGPFRDTMKSSPMEGDRK 512
           K+P R+ +   + +F  S+Y  F ++ +S  +  D +
Sbjct: 54  KIPRRIILSPRNSRFGDSLYTHFNESNRSDDINFDNR 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,180
Number of Sequences: 5004
Number of extensions: 52112
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)