Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P22
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430...   122   3e-28
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    29   3.3  
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301...    29   4.4  
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    28   7.7  

>06_03_1311 -
           29241884-29242054,29242802-29242879,29242968-29243049,
           29243141-29243212,29243316-29243437,29243541-29243596,
           29244264-29244333,29244435-29244518,29244599-29244667,
           29244855-29244928,29245014-29245125,29245220-29245510
          Length = 426

 Score =  122 bits (294), Expect = 3e-28
 Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
 Frame = -1

Query: 682 APSDMMANRXKQSKGGLVRNKLPNRVSILSXSCKFASSMYGPFRDTMKSSPMEGDRKCYQ 503
           +PSDMM  R    +  L      + VSI+S + K+ASS YGPFR+ + S+P  GD+K YQ
Sbjct: 261 SPSDMMDGRVGAIRAALDAEGFHD-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQ 319

Query: 502 LPPGSXXXXXXXXXXXXXXXADFLMVKPGLPYLDIVRQTKDRFPHHPLFIYQVSGEYELI 323
           + P +               AD L+VKPGLPYLD++R  +D     P+  YQVSGEY +I
Sbjct: 320 MNPANYREALLETAADEAEGADILLVKPGLPYLDVIRLLRDN-SALPIAAYQVSGEYSMI 378

Query: 322 SRSG--DRASMQTNLMEILTCMRRAGADCIITYFA 224
              G  +    +  +ME L C+RRAGAD I+TYFA
Sbjct: 379 KAGGALNMIDEEKVMMESLMCLRRAGADIILTYFA 413


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
 Frame = +1

Query: 631 PAPPWIAXS--YWPSCLKEPPMSXALHXP-----CXSLSXYRCSXPIPPHPX*AXCPXY 786
           PAPPW+       P+    P M    H P     C ++       P PP P    CP Y
Sbjct: 317 PAPPWVPPPPPSDPAFWHHPYMRGPAHVPTQGTPCMAMPMPAARFPAPPVPGVVPCPMY 375


>08_02_1512 +
           27627740-27629009,27629111-27629256,27629842-27630101,
           27630346-27630412,27630511-27630545,27630818-27631587,
           27631633-27631793
          Length = 902

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 431 DGETGPALPGHSAADQGPLPAPPLV 357
           DG  GP LPG       P P+PP V
Sbjct: 231 DGAAGPPLPGSYYGSAAPPPSPPRV 255


>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 679 PSDMMANRXKQSKGGLVRNKLPNRVSILSXSCKFAS--SMYGPFRDTMKSSPMEGDRKCY 506
           P   +A R   +  G     LP  ++  +  C  +S  +  G  +DT  +  +EGD+  Y
Sbjct: 670 PISQVAKRASDNIRGHSSTVLPVSLNNTNEPCSISSQEASAGNTKDTSHTEHIEGDKPIY 729

Query: 505 QLPP 494
           + PP
Sbjct: 730 EDPP 733


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,757,119
Number of Sequences: 37544
Number of extensions: 406538
Number of successful extensions: 1204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)