Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P20
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    30   1.9  
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    30   2.5  
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233...    29   3.3  
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    29   4.3  
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    29   5.7  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   7.6  
01_06_0475 + 29610268-29610711                                         28   7.6  

>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 472 ISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPK-HVISDP 317
           +S Y +S SM  F  +AR   P++ ++ NY+          RRR +  + SDP
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 311 STNGAFR*FKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 132
           S NG       R P SS  +L  +G    L+L  S   F P   SG+R RSGG       
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256

Query: 131 LLGFVLATS-SGLSPVSSPTKV 69
             G V+    +GL   +SP ++
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQI 278


>02_05_0181 -
           26522849-26522932,26523053-26523184,26523263-26523329,
           26523800-26524186,26524259-26524360,26524983-26525132,
           26525552-26525636,26525743-26525769,26525858-26526116,
           26526659-26526751,26526921-26527013,26527122-26527289,
           26527436-26527594,26528214-26528273,26528392-26528487
          Length = 653

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
 Frame = -2

Query: 344 SPKTRHLGPAR-STNGAFR*FKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSR 168
           S K R +GPAR   +G     KHRS + +  +    G+T  LT      +     L   +
Sbjct: 408 SEKYRWMGPARYDFSGTMVFLKHRS-YEAKVAFLENGNTHSLTASAENNANGVQTLQYHQ 466

Query: 167 FRSGGRFCEARLLLGFVLATSSGLSPVSSPTKVRATLI*PLWL 39
            R     C    L+    +TS   S   +P   R     P W+
Sbjct: 467 NRHRKTICRTNCLICKGTSTSEQNSEDENPDSSRTACETPKWV 509


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -2

Query: 251 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 81
           L TKG    +T+ H P+ FSP         S G   E+ L      + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259


>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 365 QNGKQSTSPKTRHLGPARSTNGAFR*FKHRSPFSSNPSLATKGSTSKLTLR 213
           Q+  Q+ +P + H  PA+  N  ++   +RSPFS+  S   + S S ++ R
Sbjct: 429 QSNSQTPTPISEH-HPAKHFNPIYQTSANRSPFSAVASGVNEASVSDISTR 478


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -3

Query: 556 QSRFCRIAV-GAPWFVRNVDLHDDLDLESISKYLQSASMRHFD--KAARHENPLI--VAA 392
           +++F ++AV GAP ++R VDL      + +   LQ     HF   K    E  L+  V+ 
Sbjct: 118 KAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176

Query: 391 GNYIPDPADR 362
             Y+P   D+
Sbjct: 177 NEYVPTYEDK 186


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 275 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 186
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,889,348
Number of Sequences: 37544
Number of extensions: 439252
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)