Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P20
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   3.9  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.8  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.8  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   9.0  

>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = -2

Query: 767 RITFPPHIKTVXVRPPFILGRXYPMICRRSKMSLRNKVT---LYKTCIRPRHDLCKC-SV 600
           + TFP H     V+    +G    M C  S    R  +    L   C+ P HD+ KC S 
Sbjct: 688 QFTFPFHQPESNVQCMACMGPHKSMRCTLSSKQFREVIREKRLCANCLNPHHDIKKCRSY 747

Query: 599 RS 594
           RS
Sbjct: 748 RS 749


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 794 KXLGVTLDSRITFPPHIKTV 735
           + LG+  DS++TF PHIK +
Sbjct: 196 RDLGILTDSKLTFKPHIKKI 215


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 496  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 380
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 496  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 380
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 373 PADRMESSRRRPKHVISDPPDP 308
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,521,851
Number of Sequences: 27780
Number of extensions: 334797
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)