Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P19
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.32
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.73
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.0
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.0
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.2
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 6.8
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.0
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.0
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.32
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 705 SPAXSGTSTRSSNPXFHTPTTPDLTSISINPPDAVXEGVRAGVKASVVIRGSISVSHPLV 526
S S +ST N FH PT TS S A +GV + S+ + + SV+
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAY 860
Query: 525 T 523
T
Sbjct: 861 T 861
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.73
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 734 GVXP-YASSHPPLRXRVHQPDHQIPDSIHQPPQT*HPFPSIPLTPX*KEFAPGLKPPL-S 561
G+ P + S PP+R + P + PP + P PS P P AP PPL +
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPA 1737
Query: 560 SEAPS 546
S APS
Sbjct: 1738 SSAPS 1742
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 104 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 232
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.3
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = -3
Query: 725 PYASSHPPLRXRVHQPDHQIPDSIHQPPQT*HPFPSIPLTPX*KEFAPGLKPPLSSEAPS 546
P A P L + QP +P + PP PFP P P PP AP
Sbjct: 509 PGAPGMPNLN--MSQPP-MVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP---GAPG 562
Query: 545 AYLT--PSSLGMXKGVSPP 495
+Y T S+L GVS P
Sbjct: 563 SYNTSESSNLNAPPGVSMP 581
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 259 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 164
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -1
Query: 358 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 179
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 178 LSASIQASLPSSEIYRQL 125
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 469 KLRALLVVIPRILRSPPPTHPLIEDV 392
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 146 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 48
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 334 LVTHKELALKVSSIIGTRVYVFDPSCY 254
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 474 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 388
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 711 PPSPAXSGTSTRSSNPXFHTPTTPDLTSISINP 613
PP PA + ++ SS+P T +T TS SI P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPP 401
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 724 LMHQATLPCDXGYINPIIKSXIPYTNHP 641
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 119 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 220
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,455
Number of Sequences: 5004
Number of extensions: 60099
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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