Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P19
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    31   1.2  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    29   3.6  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    29   3.6  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = -2

Query: 702 PAXSGTSTRSSNPXFHTPTTPDLTSISINPPDAVXEGVRAGVKASVVIRGSISVSHPLVT 523
           P  SGT  +S           +L+S + N P  V  G  +G   +  I  + S + P  +
Sbjct: 564 PGGSGTGPKSQPKPSEKQLVSNLSSFASNTPSTVKFGFGSGASTTTTIASTTSNTIPFGS 623

Query: 522 GHG*RGFAPLFSS 484
           G      APLF +
Sbjct: 624 G---SSVAPLFGA 633


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
 Frame = -3

Query: 686 HQPDH--QIPDSIHQPPQT*HPFPSI---PL-TPX*KEFAPGLKPPL--SSEAPSAYLTP 531
           H P+H   +P S    P      P++   P+ TP     A  L PP+  SS  P    TP
Sbjct: 446 HTPEHVCPLPRSFSSTPAAEQFLPTLEGAPVWTPSAVSTASELSPPIPMSSPPPPLPRTP 505

Query: 530 SSLGMXKGVSPPYFQVNDESQASRLISR 447
                    S PY Q+N+    +R  +R
Sbjct: 506 QPNNGLPNASLPYNQINNAGSFTRTAAR 533


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -3

Query: 713  SHPPLRXRVHQPDHQI---PDSIHQPPQT*HPFPSIPLTPX*KEFAPGLKPPLSSEAPSA 543
            S  PL   V  P  Q+     S+  PP    P P+  +           + P+++EAP+A
Sbjct: 1152 SADPLPNLVKPPPVQVVAPSPSVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAPAA 1211

Query: 542  YLTPSSLGMXKGVSPP 495
               PS   + +G SPP
Sbjct: 1212 AAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -3

Query: 713  SHPPLRXRVHQPDHQI---PDSIHQPPQT*HPFPSIPLTPX*KEFAPGLKPPLSSEAPSA 543
            S  PL   V  P  Q+     S+  PP    P P+  +           + P+++EAP+A
Sbjct: 1152 SADPLPNLVKPPPVQVVAPSPSVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAPAA 1211

Query: 542  YLTPSSLGMXKGVSPP 495
               PS   + +G SPP
Sbjct: 1212 AAAPSRARVPRGPSPP 1227


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 725 PYASSHPPLRXRVHQPDHQIPDS 657
           P +S HPPL    H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 719 ASSHPPLRXRVHQPDHQIPDSIHQPPQT*HPFPSIPLTPX*KEFAPGLKPPL-SSEAP-S 546
           ++  PP R     P  + P +   PP T  P  +    P     AP  +PP+   E P S
Sbjct: 291 SAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTRPAPASQPPVREPETPDS 350

Query: 545 AYLTPS 528
            Y +P+
Sbjct: 351 GYPSPA 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,202
Number of Sequences: 27780
Number of extensions: 350850
Number of successful extensions: 1217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)