Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P18
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0304 - 2299676-2299938,2300493-2300841 31 0.82
02_01_0302 - 2021221-2023305 31 1.4
02_05_0814 - 31970558-31971126,31971242-31971413 30 1.9
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 29 3.3
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.4
01_06_1682 - 39130696-39131705,39132355-39132583 29 4.4
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 29 5.8
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.8
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 29 5.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.8
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 5.8
08_01_0397 - 3509186-3510291,3510322-3512335 28 7.7
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011... 28 7.7
>12_01_0304 - 2299676-2299938,2300493-2300841
Length = 203
Score = 31.5 bits (68), Expect = 0.82
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 558 DNGGFNPGANSLLVRRQGIDGNGC*VWGWLVYGNPGDXMIGVDVAXIPXXG 710
DNGG A L + G+DG GC V + G+ G +G D P G
Sbjct: 80 DNGGGGATARQLRLDGVGVDGAGCGVVSGRLDGSGGAGTLGPDSTGRPASG 130
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Frame = -1
Query: 718 SSHPXXGXSATSTPIIXSP--GFPYT-NHP----QT*HPFPSIP*RRTRREFAPGLKPPL 560
SSH G S+++TP SP G P T +HP T +PS P T + PP
Sbjct: 455 SSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYH---SPPQ 511
Query: 559 SSEAPSAYLTPSSLGMXKGVSPP 491
PS PSS SPP
Sbjct: 512 GHTTPSHPSPPSSSTAPPSHSPP 534
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/67 (26%), Positives = 25/67 (37%)
Frame = -1
Query: 715 SHPXXGXSATSTPIIXSPGFPYTNHPQT*HPFPSIP*RRTRREFAPGLKPPLSSEAPSAY 536
S P T P +P PY + P P+PS P + P S A +
Sbjct: 145 SSPSSPTPTTPNPSTPTPTTPYPSTPMPTTPYPSTPMTTPTTPYTTPTSPACSGGAGATP 204
Query: 535 LTPSSLG 515
+TP + G
Sbjct: 205 VTPVTPG 211
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = -1
Query: 676 IIXSPGFPYTNHPQT*HPFPSIP*RRTRREFAPGLK--PPLS----SEAPSAYLTPSSLG 515
++ + G P+ HP HP P + T R FAP + PP + +A L PSS
Sbjct: 677 VLGNQGQPH--HPPQFHPHPHSHLQETIRSFAPSMSVAPPQNIFHGQGGSAAALLPSSFP 734
Query: 514 MXKGVSPPY 488
+ V PPY
Sbjct: 735 VPPAV-PPY 742
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 81 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 182
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -1
Query: 685 STPIIXSPGFPYTNHPQT*HPFPSIP*RRTR----REFAPGLKPPLSSEAPSAYLTPSSL 518
S P I P FPY + P + + +PS P +F+P PP + P ++ PS
Sbjct: 175 SKPHIQPPIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSP---PPFNKFPPPSHQYPSPP 231
Query: 517 GMXKGVSPPY 488
PPY
Sbjct: 232 QSSYHSPPPY 241
>12_02_0756 +
22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Frame = -1
Query: 718 SSHPXXGXSATST-PIIXSPGFPYT-NHPQT*HPFPSIP*RRTRREFAPGLKPPLSSEAP 545
SS P + T+T P SP P + HP + P S P R+ +P +PPL + P
Sbjct: 554 SSTPSSSQAMTATAPAPPSPPEPPSPQHPPSPPPLRSPP-RQPTPPPSPSQQPPLPTPQP 612
Query: 544 SAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 443
S +PP Q + + S L+ +
Sbjct: 613 VQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQ 646
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 73 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 219
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 694 SATSTPIIXSPGFPYTNHPQ-T*HPFPSIP*RRTRREFAPGLKPPLSSEAPSAYLTPSSL 518
+ATS P+ S G P N P T P + +T P PP+ S +++TP +
Sbjct: 259 AATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTE----PTTLPPMVSAPAFSHVTPVAN 314
Query: 517 GMXKGVS 497
G+ +G+S
Sbjct: 315 GVSQGLS 321
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 240 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 61
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 60 ILHSF 46
+LHSF
Sbjct: 1408 LLHSF 1412
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = -1
Query: 715 SHPXXGXSATSTPIIXSPGFPYTNHPQT*HPFPSIP*RRTRREFAPGLKPPLSSEAPSAY 536
S P G S + P + P P + P T P P P ++ ++ + L P P
Sbjct: 49 SPPSPGYSDSPEPPL--PDSPPSQEPDTPEPAPPTPPQQQQQPWQSPLPPRREPAPPRTV 106
Query: 535 LTPSSLGMXKGVSPPYFQVN 476
+ P G PP +N
Sbjct: 107 VPPQEPGWSSVPPPPARVIN 126
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 519 SDEGVRYADGA-SDDNGGFNPGANSLLVRRQGIDGNG 626
SDE DG SDDNGG GA + V G + NG
Sbjct: 233 SDEEGNQEDGKKSDDNGGSGAGAMDVDVPNGGDNANG 269
>04_03_0055 +
10299539-10299703,10300042-10300746,10301025-10301116,
10302896-10303313
Length = 459
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 738 GXXPLGXQATLPXGX--RLHQPRSSNPPDFHTPTT--PRLNIHFHQSP 607
G PL AT P LH PR S+P H P+T PR I F Q+P
Sbjct: 321 GCPPLVLHATSPLRLLCTLHGPRLSSPKPSHQPSTHLPRCFI-FPQNP 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,363
Number of Sequences: 37544
Number of extensions: 497557
Number of successful extensions: 1360
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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