Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P16
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 1.9
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.6
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 99 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 660 PGFHTPTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQ 481
P P P + +P NP TP+ P + A + L P G+ G PY
Sbjct: 261 PALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLPP---GLKNGSDYPYLS 316
Query: 480 V 478
V
Sbjct: 317 V 317
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 254 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 159
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = -2
Query: 723 RPYASSHXPLGFRXHQPDHQIPGFHTPTTPDLTSIPINPLTPY*KEFAPG--LKPPLSSE 550
R + + H P P H PG H P P + P + P PG + PP
Sbjct: 195 REFPAHHEPGEHMPPPPMHHKPGEHMP-PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 253
Query: 549 APSAYLTPSSLGMAKGVSPP 490
P ++ P + G P
Sbjct: 254 EPGEHMPPPPMHHEPGEHMP 273
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 353 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 174
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 173 LSASIQASLPSSEIYRQL 120
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 645 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 526
P P++ S+P P+ P E +PP++ AP P
Sbjct: 581 PVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 645 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 526
P P+ S+P P+ P E +PP++ P A P
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVP 605
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 645 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 526
P P+ S+P P P E +PP++ AP P
Sbjct: 551 PVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 141 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 43
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,712
Number of Sequences: 5004
Number of extensions: 66898
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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