Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P13
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 32 0.58
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.1
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.4
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 7.1
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 9.4
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426... 28 9.4
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.4
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +2
Query: 494 GETPLAMPSDEGVRYADGASDDNGGFNPGANSFXYGVRGL----MEMDVKSGVVGVWNRG 661
GE+ A+PSD + DG + N G NS Y RG + D + VW +G
Sbjct: 334 GESSSAIPSDRHLEIIDGNNHFNNGLL--HNSSAYQSRGNHYDDNDDDDDEDLGSVWLQG 391
Query: 662 FDDPG*CXRNRRGXWLDA 715
+D G RG WL A
Sbjct: 392 WDGMGWDEPTFRGVWLRA 409
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 651 HTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMANGVSPPY 487
++PT+P TS +P +P +P P PS +PSS + SP Y
Sbjct: 1780 YSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -1
Query: 651 HTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSS--LGMANGVSPPY 487
++PT+P TS S +P +P +P P + +PS +PSS L + SP Y
Sbjct: 1718 YSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNY 1776
>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
4262554-4262718,4262811-4263178,4263225-4263861,
4263952-4265844,4266325-4266672
Length = 1482
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +2
Query: 494 GETPLAMPSDEGVRYADGASDDNGGFNPGANSFXYGVRGLMEMDVKSGVVGVWNRGFDDP 673
G + L + + G R DGA G GA S VR + + + VVG +NR D P
Sbjct: 1070 GASYLNLLINVGARSDDGAYARASGIAAGAVS---NVRTVAALCAQGSVVGTFNRALDGP 1126
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,847,244
Number of Sequences: 37544
Number of extensions: 455753
Number of successful extensions: 1330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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