Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P13
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    29   4.8  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   8.4  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = -1

Query: 678 QPGSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMANGV 499
           +PG+S+    +PT  D +  S    T   +     ++   SS +PS + TP  +G  + V
Sbjct: 709 RPGTSSTATDSPTMDDTSKTS----TVTSEGTTLSIESTESSASPSDFTTPDFIGFTSSV 764

Query: 498 SPPYFQVNDESQASRLISRHSTHT 427
           S    Q +  S +S   +   T T
Sbjct: 765 SRTSEQYSSSSPSSDTTTMDVTST 788


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
            protein M70.1 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
 Frame = -1

Query: 678  QPGSSNPRFHTPT--TPDLTSISINPLTPX*KEFAPGLK-PPLSSEAPSAYLTPSSL--G 514
            +P +  P+   P   TP    + + P  P   E    +      +E P   +TP      
Sbjct: 817  KPSAPKPKPDVPVNPTPQTAKVPVAPAPPAKDEKPKDVNVKKAETEKPKTEVTPKPAHKS 876

Query: 513  MANGVSPPYFQVNDESQASRLISRHSTHT 427
             A+ V     +  D+S A   IS+  THT
Sbjct: 877  AASKVDATNTKTEDQSSAQNCISQSMTHT 905


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 660 PRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAP-SAYLTPSSLGMANGVSPPYF 484
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 483 QVNDESQASRLISR 442
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 660 PRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAP-SAYLTPSSLGMANGVSPPYF 484
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 483 QVNDESQASRLISR 442
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/81 (27%), Positives = 35/81 (43%)
 Frame = -1

Query: 696 LRFRXHQPGSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSL 517
           L  + + P S+ P   + T PDL         P      PG++   SS +PSA     S 
Sbjct: 73  LTSKSYMPASTAPTSASATAPDLKKEKAPAEKPSKPTAPPGVQK--SSSSPSA-SKAESR 129

Query: 516 GMANGVSPPYFQVNDESQASR 454
            +   +SPP  +  ++ + SR
Sbjct: 130 PLRKRISPPPSENREKEKQSR 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,945
Number of Sequences: 27780
Number of extensions: 348224
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)