Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P09
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 207 2e-54
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 207 2e-54
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.80
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 27 2.4
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 3.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.3
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 27 4.3
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 5.6
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 26 5.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.5
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 207 bits (505), Expect = 2e-54
Identities = 99/155 (63%), Positives = 117/155 (75%)
Frame = -2
Query: 578 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK--- 292
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 114
E ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/70 (48%), Positives = 45/70 (64%)
Frame = -1
Query: 768 HIMEIQXNGXTMETK*NGPREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIPKVSLFVGTQ 589
H+MEIQ NG ++ K REH EK + + S F Q+EMID IGVT+G+ + GT+
Sbjct: 177 HLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTK 236
Query: 588 RSYPRKTHQG 559
R PRKTH+G
Sbjct: 237 R-LPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 207 bits (505), Expect = 2e-54
Identities = 99/155 (63%), Positives = 117/155 (75%)
Frame = -2
Query: 578 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK--- 292
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 114
E ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/70 (48%), Positives = 45/70 (64%)
Frame = -1
Query: 768 HIMEIQXNGXTMETK*NGPREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIPKVSLFVGTQ 589
H+MEIQ NG ++ K REH EK + + S F Q+EMID IGVT+G+ + GT+
Sbjct: 177 HLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTK 236
Query: 588 RSYPRKTHQG 559
R PRKTH+G
Sbjct: 237 R-LPRKTHRG 245
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.80
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 405 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 503
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 1 FFFFCFXALSNVYFH 45
FFF CF LS VYFH
Sbjct: 230 FFFACFVVLSLVYFH 244
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 372 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 494
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 2.4
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -2
Query: 809 PXSNEAVKXXTXRXTLWKSXLTGXPWRQSEMGPENIWRNLSLSILCLPKMK*LTALVSPK 630
P +NE V+ T L KS + Q + P +W IL K K TA +PK
Sbjct: 85 PSNNELVRTNT----LTKSAIV-----QIDAAPFRVWYETHYGILMGSKGKKATATPTPK 135
Query: 629 XKGYQRCH 606
K QR H
Sbjct: 136 SKHVQRKH 143
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 202 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 89
NS+ PR + R+ L L + HS+R F KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 135 HGYTQEGSYSRRSCGYHNPS 76
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 690 IPVDSVFAQDEMIDCIGVTQGQRIPKVSLFVGTQ 589
IPV D+ + C G Q +PK+ FV TQ
Sbjct: 385 IPVTHRGVADQFLVCTGTGQKGSMPKIPSFVPTQ 418
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 587 LCVPTKSDTFGILXPWVTPMQSII-SSWANTESTGIGFSKCSLG 715
L VP+ D FGI+ P + PM ++ + NT T K LG
Sbjct: 619 LGVPSSVDGFGIILPCIIPMGTVTRRAVENTWLTASNSKKNRLG 662
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = -2
Query: 809 PXSNEAVKXXTXRXTLWKSXLTGXPWRQSEMGPENIWRNLSLSILCLPKMK*LTALVSPK 630
P +NE V+ T L KS + Q + P +W IL K K T+ +PK
Sbjct: 85 PSNNELVRTNT----LTKSAIV-----QIDAAPFRVWYETHYGILMGSKGKKATSTPNPK 135
Query: 629 XKGYQRCH 606
K QR H
Sbjct: 136 SKHVQRKH 143
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 357 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 485
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 417 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 542
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,799
Number of Sequences: 5004
Number of extensions: 75593
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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