Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P09
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 220 9e-58
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 213 1e-55
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.6
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435... 29 3.4
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.4
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 5.9
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.8
01_07_0119 + 41179458-41179533,41180455-41180921 28 7.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 220 bits (538), Expect = 9e-58
Identities = 103/153 (67%), Positives = 121/153 (79%)
Frame = -2
Query: 578 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 218 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 120
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = -1
Query: 768 HIMEIQXNGXTMETK*NGPREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIPKVSLFVGTQ 589
H+MEIQ NG T+ K + + EK IPVD+VF +DEMID IGVT+G+ V G
Sbjct: 180 HLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
Query: 588 RSYPRKTHQG 559
R PRKTH+G
Sbjct: 240 R-LPRKTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 213 bits (520), Expect = 1e-55
Identities = 99/145 (68%), Positives = 117/145 (80%)
Frame = -2
Query: 578 PVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 219
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 218 EKINLKFIDTSSKFGHGRFQTPADK 144
E+I LKFIDTSSKFGHGRFQT +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = -1
Query: 768 HIMEIQXNGXTMETK*NGPREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIPKVSLFVGTQ 589
H+MEIQ NG T+ K + + EK IPVD+VF +DEMID IGVT+G+ V G
Sbjct: 180 HLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
Query: 588 RSYPRKTHQG 559
R PRKTH+G
Sbjct: 240 R-LPRKTHRG 248
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 184 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 41
PS V+ +RRR+ R +S + R + F+K P P+R ++ ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335
>06_01_0604 -
4358278-4358442,4358835-4358943,4359236-4359331,
4359823-4359956,4360639-4360905,4361225-4361310,
4361409-4361501,4361601-4361696,4361986-4362093,
4362473-4362493,4363856-4364156
Length = 491
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 632 WVTPMQSIISSWANTESTGIGFSKCSLGPFH 724
W+ QSI++SW S G ++ +GPFH
Sbjct: 97 WLNGGQSIVTSWPGCSSIAYGVAE-EVGPFH 126
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 377 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 282
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 169 VDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 41
V S RL RL W + + LRL P+R C A+ VV E
Sbjct: 11 VSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAE 53
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 521 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 372
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 371 SEKSITPMGGFPHYGEVNN 315
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>01_07_0119 + 41179458-41179533,41180455-41180921
Length = 180
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 465 STVMITFLTSTSYSER-HPRRMPSSNAGNFPKTLGVSYGGSFFVCQR 602
+ VM ++ S R PRR P+ ++G ++L S+GG C+R
Sbjct: 2 AAVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSSFGGVSLQCRR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,556,712
Number of Sequences: 37544
Number of extensions: 526054
Number of successful extensions: 1273
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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