Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P05
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.4  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   4.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.0  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.0  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 75  TFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGS 224
           +++TN  +    T   S T    S  P  S S ++PT VP+  S+ +  S
Sbjct: 270 SYSTNLTTTGSTTTTGSATV---SSSPFYSNSSVIPTSVPSSVSSFTSSS 316


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 211 TAEVCVGTSVGTITEPDCLGPCEPGTSVTLEGI 113
           ++ V V ++VGT+TE    G  E  T++  EGI
Sbjct: 80  SSPVIVVSTVGTVTETTISGSTEYTTTIPAEGI 112


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 69  HVTFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGSVF 230
           H++  TN+       +P+S+T+ P +Q      S  +P      TS+ S    F
Sbjct: 121 HISNFTNSQKYFANDLPNSLTDQPLAQPSASQRSTWLPCSAAVSTSSPSSDPFF 174


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 211 TAEVCVGTSVGTITEPDCLGPCEPGTSVTLEGI 113
           ++ V V ++VGT+TE    G  E  T++  EGI
Sbjct: 80  SSPVIVVSTVGTVTETTISGSTEYTTTIPAEGI 112


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 178 CRLTFPHTLLQSPWVP 225
           C LT PHT +   W+P
Sbjct: 470 CDLTIPHTAINDSWLP 485


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 102 SCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAV 212
           S  T P+S T    S+G + +G    P   PT+ S +
Sbjct: 383 SANTAPNSPTSANSSEGNQGNGPTTYPIKPPTNISEI 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,028
Number of Sequences: 5004
Number of extensions: 33708
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)