Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_P05
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.22 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           25   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 154 RGSPAR*LCRLTFPHTLLQSPWVPFFVSWLVAVCFDFLVLSR 279
           RG+  +  CR   P   L   W+P   +W++    D LVL +
Sbjct: 481 RGAIQQWTCRQPEPLIELIEHWMPLLPNWILENILDMLVLPK 522


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 196 VGTSVGTITEPDCLGPCEPGTSVTLEGIVWHETEGVLVV 80
           +G ++  IT+P        G    + G+++ ET GVL V
Sbjct: 23  LGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV 61


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 167 AGLPRALRAWYLGHTGGHRLA*DGRCISC 81
           AGLP A+ A  L H     L   G C +C
Sbjct: 346 AGLPSAILAMRLSHPLHGNLLPPGVCYTC 374


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 252 YSHQPRNKKRNPRRLQKCV 196
           Y H+P N   N +R  KC+
Sbjct: 460 YIHEPWNAPLNVQRAAKCI 478


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -1

Query: 225 RNPRRLQKCVWERQSAQSP--SRTASG 151
           + P R   C WE  +  SP   RT +G
Sbjct: 4   KQPNRPSYCTWELNATNSPHTCRTKNG 30


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 37  PVGFPRKFSLATSRLQLIHLPSH 105
           P G PR         +LIH+P H
Sbjct: 14  PAGPPRLLGWNVPAEELIHIPEH 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,386
Number of Sequences: 438
Number of extensions: 2755
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)