Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P04
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.3
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.7
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 7.7
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = -2
Query: 674 GSSNPRIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVS 495
GSSN +P P + SIPL P + P PP APS P L ++ VS
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPLSSSRAVS 386
Query: 494 PP 489
P
Sbjct: 387 NP 388
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 98 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 226
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 253 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 158
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 687 GTSTRIIKSPDSIHQPPPDLTSISINPPDAVLEGVR 580
GT++ + ++P P+ +S PPD+V EG++
Sbjct: 586 GTASLCLNEDVMGYEPIPNWADVSDLPPDSVREGIK 621
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 352 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 173
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 172 LSASIQASLPSSEIYRQL 119
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 693 ISGTSTRIIKSPDSIHQPPPDLTSISINPPDAVLEGVRAGVKASVVIRG 547
+S TS P S+H P DL +N P+ L R+ ++ I G
Sbjct: 123 LSSTSKTENDPPLSLHTTPDDLQGNGVNVPNPSLSASRSWYQSGYGISG 171
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -1
Query: 717 ASSHPS---PXISGTSTRIIKSPDSIHQPPPDLTSISINPPDA 598
ASS P+ P SG + + +P+S+ PPP S PP A
Sbjct: 139 ASSAPASQEPSASGVNAPTVSAPNSMVSPPP-----SFQPPSA 176
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 468 ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 382
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,766
Number of Sequences: 5004
Number of extensions: 67941
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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