Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_P04
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 33 0.29
02_05_0814 - 31970558-31971126,31971242-31971413 32 0.66
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 30 2.0
10_01_0168 - 1883380-1883594,1884572-1888325 29 3.5
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.7
01_06_1682 - 39130696-39131705,39132355-39132583 29 4.7
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 6.2
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 6.2
10_08_0127 - 15010125-15011068,15011328-15011835 28 8.1
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 8.1
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 28 8.1
05_03_0635 - 16446805-16447716 28 8.1
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 8.1
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 28 8.1
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 28 8.1
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 33.1 bits (72), Expect = 0.29
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = -2
Query: 677 PGSSNP-RIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMA 507
PGS P +P + P P P P P APG P S P+ Y T P G
Sbjct: 139 PGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPT 198
Query: 506 KGVSPP 489
G PP
Sbjct: 199 SGAPPP 204
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 677 PGSSNPRIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 513
P + P PY + P P+PS P+T + P S A + +TP + G
Sbjct: 157 PSTPTPTTPYPSTPMPTTPYPSTPMTTPTTPYTTPTSPACSGGAGATPVTPVTPG 211
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -2
Query: 677 PGSSNPRIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGV 498
P +++P P+ HP +P+P P AP +P ++ + Y T S + G
Sbjct: 16 PPAADPHHPHYPHPYAGYPYPYAAYNP----AAPASEPATAASSSYYYPTAVSAAASAGQ 71
Query: 497 SPPY 486
PY
Sbjct: 72 YDPY 75
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 744 HYYGGFRXYASSHPSPXISGTSTRIIKSPDSIHQPPPDLTSISIN 610
H G S P ++ S R KS + I + PP LTSISI+
Sbjct: 1000 HVSGESTRVPSDQLLPYLTSLSIRQCKSLEEIFRLPPSLTSISIH 1044
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 79 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 180
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 680 QPGSSNPRIPYTNHPQT*HPFPSIPLT----PY*KEFAPGLKPPLSSEAPSAYLTPSSLG 513
+P P PY + P + + +PS P P +F+P PP + P ++ PS
Sbjct: 176 KPHIQPPIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSP---PPFNKFPPPSHQYPSPPQ 232
Query: 512 MAKGVSPPY 486
+ PPY
Sbjct: 233 SSYHSPPPY 241
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 71 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 217
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 238 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 59
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 58 ILHSF 44
+LHSF
Sbjct: 1408 LLHSF 1412
>10_08_0127 - 15010125-15011068,15011328-15011835
Length = 483
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -1
Query: 753 IFLHYYGGFRXYASSHPSPXISGTSTRIIKSPDSIHQPPPDLTSISINPPDAVLEGVRAG 574
+F +G F +++ P P +S+R + +P + PP T PP + + G
Sbjct: 151 VFTRAHGRFCKKSAAAPPPPFEASSSRFLATPRTPSSPPLRSTP----PPFREMNRIGIG 206
Query: 573 VKASVVIRG 547
AS+ + G
Sbjct: 207 AGASLPVDG 215
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 677 PGSSNPRIPYTNH-PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS 540
P ++ P P T P T +P PS L P P + PP+ S APS
Sbjct: 31 PATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPS 77
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 668 SNPRIPYTNHPQT*HPFPSIPL-TPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSP 492
S P P + +T P P P+ TP + P +PP++S P+A TP++ A +
Sbjct: 95 SQPATPVASVART--PPPQAPVVTP--EPAPPSAQPPVASATPAAAATPAAAVTASSDAD 150
Query: 491 PYFQ 480
Y Q
Sbjct: 151 VYSQ 154
>05_03_0635 - 16446805-16447716
Length = 303
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 642 PPPDL-TSISINPPDAVLEGVRAGVKASVVIRGS 544
PPPD TS+S++PP A A + AS V+ GS
Sbjct: 198 PPPDPPTSLSLSPPGA----AAAAISASTVVGGS 227
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 662 PRIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPP 489
P+ P+T+ P + PF + P P F G PP S+ P P S G G +PP
Sbjct: 98 PQGPFTSAPSSQGPFAAAPQPPSQGPF--GTAPP-PSQGPFGTAPPPSQG-PFGTAPP 151
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = -2
Query: 683 HQPGSSNPRIPYTNHPQT*HPF-PSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMA 507
H P S P+ P PQ P P P K AP PP AP+ + + A
Sbjct: 93 HAPAPSPPQAPAMTPPQAPAPTPPQAPRPAPSKSRAPQAPPP----APTRATKKAKVDTA 148
Query: 506 KGVSPPYFQVNDESQA 459
K P Y +E A
Sbjct: 149 KNKDPGYDCTQEELDA 164
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 732 GFRXYASSHPSPXISGTSTRIIKSPDSIHQPPPDLTSISINPPD 601
G R AS +PSP + +R SP +I P P + ++ P D
Sbjct: 73 GRRTLASPYPSPGLPPLPSRRSSSPFAISSPSPLRPAAAMPPAD 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,514,338
Number of Sequences: 37544
Number of extensions: 550924
Number of successful extensions: 1664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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