Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O22
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    33   0.25 
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726...    29   3.1  
11_06_0160 - 20794974-20795977,20796241-20796295                       29   5.4  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.4  
06_03_0743 + 24069752-24070483,24071890-24072345                       28   9.5  
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871...    28   9.5  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   9.5  

>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = -2

Query: 704 PSPXXXXHQPDHQSPDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 525
           P P    H+     P  +  PPP   SIS  P  P     AP   P  + + PS+   PS
Sbjct: 79  PRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPS 138

Query: 524 SLGMXKGVSPPYF 486
                   + P+F
Sbjct: 139 PPDAYPFTNYPFF 151


>07_01_0874 -
           7261191-7261274,7262291-7262440,7262769-7262916,
           7263136-7263259,7263452-7263653,7263743-7263848,
           7263979-7264442
          Length = 425

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 654 HTPTTPRLNIHFHQSPDAVLEGVRAGXKASVVIRGSISVSHPLVTGHG 511
           H+PT  RL++ F   PD  L    A  KA      + +VS P   G G
Sbjct: 25  HSPTRRRLSLVFSGPPDGALSVAAAEEKADAGEEAAAAVSAPRGGGGG 72


>11_06_0160 - 20794974-20795977,20796241-20796295
          Length = 352

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 25  SAMKLTTQNREE*GIKILRRLQRSRKKHGEDLPTGGRSRRKGEKLK*MQR 174
           S+++   + R + G  +LRR + SR++HG  L  G  +R+  ++ + + R
Sbjct: 153 SSLQPHPRRRRQEGGALLRRAESSRRQHGRALREGREARQDRKRPRTLSR 202


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 74  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 220
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = -2

Query: 683 HQPDHQSPDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 522
           H P H  P     PPP   S S    + Y     P   PP+    P   LTPS+
Sbjct: 19  HHPLHFPPPPPPPPPPYAASFS-GLYSSYLHPPPPPSSPPIREALPLLSLTPST 71


>04_02_0026 +
           8708765-8710935,8711021-8711272,8711353-8711463,
           8711553-8711634,8711909-8712100
          Length = 935

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -2

Query: 668 QSPDSIHQP-PPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
           + P   HQP PP L S    P  P     +P  +PPL +  P      S        +PP
Sbjct: 488 EPPSPRHQPSPPPLRSPPRQPTPPP----SPSQQPPLPAPQPVQASPTSPAKQHAPPAPP 543

Query: 491 YFQVNDESQASRLISR 444
             Q +  +  S L+ +
Sbjct: 544 SVQTSPPTPQSALVEQ 559


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 442 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 353
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,004,136
Number of Sequences: 37544
Number of extensions: 404565
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)