Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O16
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.34 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 717 EECPKIRRDVRHGR*RHPERV-GQGEQHRPQQEHRDQERQGSS 592
           +E  ++R   R  R  H +RV  Q +Q + QQ+ +DQ++Q  S
Sbjct: 67  KEMEQMREREREQR-EHSDRVTSQQQQQQQQQQQQDQQQQQQS 108


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 172  QHQMPVSTKGSPFKLGSF 119
            Q Q P+ T  SPFK G +
Sbjct: 980  QSQQPIMTDPSPFKRGRY 997



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 651  QGEQHRPQQEHRDQERQG 598
            Q +Q + QQ+H+ +ER+G
Sbjct: 1224 QQQQQQQQQQHQAREREG 1241



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -1

Query: 696 RDVRHGR*RHPERVGQGEQHRPQQEHRDQERQ 601
           + + H +  HP+   Q +  + QQ+ + Q +Q
Sbjct: 812 QQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQ 843


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 21  NKYIYLISTWYSRAATIN*SVFKLISHRLDHNKKEPNLKGDPL 149
           N ++++I+   S        V ++ S   D  KK+  +KG P+
Sbjct: 18  NSFLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPV 60


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 21  NKYIYLISTWYSRAATIN*SVFKLISHRLDHNKKEPNLKGDPL 149
           N ++++I+   S        V ++ S   D  KK+  +KG P+
Sbjct: 18  NSFLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPV 60


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 21  NKYIYLISTWYSRAATIN*SVFKLISHRLDHNKKEPNLKGDPL 149
           N ++++I+   S        V ++ S   D  KK+  +KG P+
Sbjct: 18  NSFLFVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPV 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,962
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)