Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_O12
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 115 7e-27
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 112 7e-26
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 29 1.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 3.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.4
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 7.4
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.8
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 115 bits (277), Expect = 7e-27
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = -1
Query: 562 SYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDV 383
S+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV
Sbjct: 140 SFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDV 199
Query: 382 VVDLLFYRDPEESEKDEQQAK 320
+ DL FYRDPEE E++E+ K
Sbjct: 200 MPDLYFYRDPEEVEREEEAKK 220
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -3
Query: 707 AAHTRXYAYLRDVSXPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 564
AAHT A + PG FTN I +REPRL++V DP D Q I EA
Sbjct: 93 AAHTGATAIAGRFT-PGNFTNYITRTYREPRLIVVTDPRADAQAIKEA 139
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 112 bits (269), Expect = 7e-26
Identities = 52/79 (65%), Positives = 62/79 (78%)
Frame = -1
Query: 562 SYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDV 383
S+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V
Sbjct: 141 SFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEV 200
Query: 382 VVDLLFYRDPEESEKDEQQ 326
+ DL FYRDPEE E++E+Q
Sbjct: 201 MPDLYFYRDPEEIEREEEQ 219
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/48 (52%), Positives = 28/48 (58%)
Frame = -3
Query: 707 AAHTRXYAYLRDVSXPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 564
AAHT A + PG FTN I +REPRL+IV DP D Q I EA
Sbjct: 94 AAHTGATAIAGRFT-PGNFTNYITRTYREPRLIIVTDPRADAQAIKEA 140
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 571 LKLSYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 434
L+ ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 196 LEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 541 IALCNTDSPLRFVDIAIPCNTKSSHSI 461
+ LC+ +S RF D+A+ NTK +H I
Sbjct: 85 LQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 408 FPVTSAGML--WLICSSTVTLKKVKRM 334
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 525 VLHKAITGMLTYESFSNGLMVLCRVQYNQETRFTECSLDL 644
V+H A G+LTY + G + + +N T+ +E ++ L
Sbjct: 345 VIHHASRGILTYVRVNEGTLSRGMMMFNPRTKKSERAIRL 384
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.4 bits (53), Expect = 9.8
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -1
Query: 535 LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLPRDQRWDV---VVD 374
L D ++ D +A N HS+ G +W+ A EV+ L G W V V++
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSVGCTVIE 196
Query: 373 LL 368
LL
Sbjct: 197 LL 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,253
Number of Sequences: 5004
Number of extensions: 56462
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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