Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O12
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 379 PQHPSAGHGEAHHEASTLH 435
           P H + GHG +H  A+  H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 390 QRWSRGSTPRSLNTSRANNHHIKP 461
           Q WSRG+T  SL+ S  +   + P
Sbjct: 21  QHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 390 QRWSRGSTPRSLNTSRANNHHIKP 461
           Q WSRG+T  SL+ S  +   + P
Sbjct: 21  QHWSRGNTWLSLDNSNMSMSSVGP 44


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 59  CINTLHWLIILHES 18
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 59  CINTLHWLIILHES 18
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 14/79 (17%), Positives = 33/79 (41%)
 Frame = -1

Query: 469 HSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLLFYRDPEESEKDEQQAKEQXXXXXXXX 290
           HS  L+ + +  +  +++      Q+      ++  + P++ ++ +QQ ++Q        
Sbjct: 402 HSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQ- 460

Query: 289 XXXXVHEDWNETLEPVASW 233
                 + W    EP ASW
Sbjct: 461 -----QQHWPMEEEPAASW 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,674
Number of Sequences: 438
Number of extensions: 4035
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)