Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O10
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    30   0.45 
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    26   5.6  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.6  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -2

Query: 342 SRAPPPP----LRSXISNLSNTCDLTPLPEWSCEQSAW 241
           SR+PPP     +RS    L    D+TP+ +W  ++S W
Sbjct: 98  SRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +2

Query: 227 PHAPHHALCSHDHSGSGVRSQVLERLEMXLRSGGGGARLMRXTXXXNAYEIQ 382
           P+      CS+D+   G   ++ E +   + + GGGA   R     N + ++
Sbjct: 172 PNTRVEVWCSNDYLNMGGHKKIREAMHQCIETYGGGAGGTRNIAGHNQHAVR 223


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 330 PPPLRSXISNLSNTCDLTPLPEW 262
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,429
Number of Sequences: 5004
Number of extensions: 13465
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)