Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O07
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    31   0.95 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    31   0.95 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.9  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.9  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -1

Query: 711  PPSPAISGTS-TRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 541
            P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+ 
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666

Query: 540  LTPSSLGMXKGVSPPY 493
                S       SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -1

Query: 711  PPSPAISGTS-TRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 541
            P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+ 
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673

Query: 540  LTPSSLGMXKGVSPPY 493
                S       SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 708 PSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 529
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 528 SLGMXKGVSPP 496
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 708 PSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 535
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 534 PSS 526
           P+S
Sbjct: 548 PTS 550


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = -1

Query: 711 PPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAP-GLKPPLSSEAPSAYLT 535
           P S  I+ TS+ S+ P   +  T   T    +  +    E     ++   SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754

Query: 534 PSSLGMXKGVSPPYFQVNDESQASRLISRHSTHT 433
           P  +G    VS    Q +  S +S   +   T T
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSSDTTTMDVTST 788


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -1

Query: 729 SPLC---IKPPSPAISGTSTRSSN--PXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPL 565
           SP C   +K   PA  G+ +  +   P   T  TP+LT++++ P+T   K     + P  
Sbjct: 148 SPPCSDDVKIFCPATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTT 207

Query: 564 SSEAPS 547
           +++ P+
Sbjct: 208 TTKLPT 213


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 275 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHV-SSD 99
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S  
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFSIF 294

Query: 98  SFGVYVKS*SLIL 60
           + G +  S  LIL
Sbjct: 295 AIGGFAFSDDLIL 307


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 714 KPPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLT 607
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 732  VSPLCIKPPSPAISGTSTRSSNPXFHTPTTPDLTSISINPLT 607
            VS  C++PP+   + TST        T TTP LT+ S  P T
Sbjct: 1145 VSMACVRPPTTPTTTTSTT-------TTTTPKLTTTSTLPST 1179


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 570  PLSSEAPSAYLTPSSLGMXKGVSPP 496
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 570  PLSSEAPSAYLTPSSLGMXKGVSPP 496
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,484
Number of Sequences: 27780
Number of extensions: 350595
Number of successful extensions: 1182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)