Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O07
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   10.0 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   10.0 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   10.0 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   10.0 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   10.0 

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 709 TXPCDFGYINPIIKSXIPYTNHPRLNIHFHQSP 611
           T P ++   NP +    P   +P  + H  Q P
Sbjct: 421 TSPMEYRLYNPALIQSQPSPQYPSTSSHILQQP 453


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 735 AVSPLCIKPPSPAISGTSTRSSN 667
           A SP  ++  SPA SGTS+ +++
Sbjct: 915 ASSPGLLERASPAFSGTSSPTNS 937


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 688 YINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVR 587
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 534 PSSLGMXKGVSPPYFQVNDESQASRLIS 451
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 688 YINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVR 587
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 534 PSSLGMXKGVSPPYFQVNDESQASRLIS 451
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 688 YINPIIKSXIPYTNHPRLNIHFHQSPDAVLEGVR 587
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,851
Number of Sequences: 438
Number of extensions: 5009
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)