Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_O06
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   149   3e-37
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.3  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    28   1.8  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   3.1  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.2  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.5  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  149 bits (362), Expect = 3e-37
 Identities = 63/100 (63%), Positives = 87/100 (87%)
 Frame = -3

Query: 636 LXAHKKILSKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALXVALMTT 457
           L  +K+I+ KDSAVNA+CYGAK+++PG+LRYE GIEV++EIV++TTKGEA+A+ +A M+T
Sbjct: 268 LVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMST 327

Query: 456 STMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 337
             +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 328 VELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367



 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -1

Query: 350 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 252
           +KK+   +GKLDKYG+PNENTP +W  SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -1

Query: 236 ENGDGVEEGSRKRTASTANAGDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSETPET 57
           E  + VE+   K+  S+ ++ D + S +   E        DSE+ + ++        P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245

Query: 56  AEQPA 42
            E+PA
Sbjct: 246 EERPA 250


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 287 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAGDPDVSIEVKQ 144
           PK + N+    N+KK   +GD     +  R A+ A+A D +V    KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -1

Query: 329 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 201
           QG+LD + KP  ++PK+ +++    + K++ ++  G E   ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLXV*GFFSVRLSVRDPIFWGTCLVPL*H 410
           RF+L+   D + + P  W   ++ + +F + P  +     +R   RDP+ W   L+   H
Sbjct: 62  RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121

Query: 411 A 413
           A
Sbjct: 122 A 122


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 281 LLVCSHLVCHICQVSLXCM 337
           +L C+H +CH+C + L  +
Sbjct: 93  VLPCNHRMCHVCALRLRAL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,158
Number of Sequences: 5004
Number of extensions: 47369
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)