Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_O06
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0094 + 14378953-14380728 151 8e-37
07_03_1408 - 26353389-26355191 150 1e-36
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 33 0.20
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 32 0.46
12_01_0400 + 3169597-3170504,3170510-3171269 29 3.3
03_06_0343 + 33274329-33274981,33275197-33276121 29 4.3
03_05_0521 + 25160245-25160883 28 9.9
>03_03_0094 + 14378953-14380728
Length = 591
Score = 151 bits (365), Expect = 8e-37
Identities = 62/101 (61%), Positives = 89/101 (88%)
Frame = -3
Query: 636 LXAHKKILSKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALXVALMTT 457
L ++K+++ KDSAVNA+CYGAK+++PG+LR+E+ IEV +E+V++TTKGEA+A+ +A MTT
Sbjct: 311 LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTT 370
Query: 456 STMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 334
+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 371 AVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 411
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1
Query: 350 RKKSSYXQGKLDKYGKPNENTPKEWLNSYV 261
+KK +G LDK+GKPNE TP EWL + V
Sbjct: 406 KKKKMVAEGLLDKHGKPNEKTPSEWLRNAV 435
>07_03_1408 - 26353389-26355191
Length = 600
Score = 150 bits (363), Expect = 1e-36
Identities = 61/101 (60%), Positives = 89/101 (88%)
Frame = -3
Query: 636 LXAHKKILSKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALXVALMTT 457
L ++K+++ KDSAVNA+CYGAK+++PG+LR+E+ I+V +E+V++TTKGEA+A+ +A MTT
Sbjct: 307 LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMTT 366
Query: 456 STMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 334
+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 367 AVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 407
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 350 RKKSSYXQGKLDKYGKPNENTPKEWLNS 267
+KK +G LDK+GKPNE TP EW+ +
Sbjct: 402 KKKKMVAEGLLDKHGKPNEKTPAEWIRN 429
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 33.5 bits (73), Expect = 0.20
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Frame = -1
Query: 401 WNETRTPENG-VSDRKPHRKKSSY----XQGKLDKYGKPNENTPKEWLNSYVNYNVKKEP 237
W P+ V+D KPH +K+SY GKL + + + P E + + +K
Sbjct: 248 WRPISHPKRAAVTDAKPHTRKASYAMETESGKLKRNSRRSSAAPVESSQTNIAMETEKSR 307
Query: 236 ENGDGVEEGSRKRTASTANAGDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSETPET 57
N RK T+STA++ E+++ +S A A +T T E PE
Sbjct: 308 RN-------PRKFTSSTADSVPESQLTELEKVKRNLRKVTNSMAEASKVSTPAT-EIPER 359
Query: 56 AE 51
E
Sbjct: 360 QE 361
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 200 RTASTANAGDPDVSIEVKQEXXXXXXKRDSEA-PAEADATMD 78
RTASTA AG P + IE +Q KR EA P E D ++
Sbjct: 112 RTASTATAGQPKLDIEDEQSEDQKQNKRKKEASPEECDQAVE 153
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 350 CEAFGPRPHFLGYVSRSIMTRLSFAATP 433
CEA P H Y +R + R+S AATP
Sbjct: 212 CEATSPVDHLAYYFARGLKLRISGAATP 239
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 624 KKILSKDSAVNAVCYGAKVLLPGILRYEDGI--EVDQEIVIVTTKGEAVALXVALMTTST 451
KK++ + V +KV L G+L + DG+ +E +IV T L AL+ T
Sbjct: 373 KKVIDRGGGGGGVGGDSKVTLSGLLNFIDGLWSAFGEERLIVLTTNHVEDLDPALIRTGR 432
Query: 450 M 448
M
Sbjct: 433 M 433
>03_05_0521 + 25160245-25160883
Length = 212
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 245 KEPENGDGVEEGSRKRTASTANAGDPDVSIEVKQE 141
+EP G V G+R+R + A AG P + +++
Sbjct: 43 REPGKGAAVVAGARERVTAVAGAGAPAAGVRERRD 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,522
Number of Sequences: 37544
Number of extensions: 329861
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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