Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_N24
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 50 5e-07
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 46 7e-06
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 44 4e-05
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 43 5e-05
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 36 0.009
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 34 0.022
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 33 0.067
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 31 0.27
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 30 0.36
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.62
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 29 0.82
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 28 1.4
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 1.9
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 3.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 3.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 5.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.8
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 7.6
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 7.6
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 7.6
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 49.6 bits (113), Expect = 5e-07
Identities = 27/74 (36%), Positives = 38/74 (51%)
Frame = -1
Query: 472 NILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHA 293
N + A + +A KA+ IDP + R A Y G F+ A+ED T L L+P+HA
Sbjct: 92 NAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDPHHA 151
Query: 292 NARKYLGETLVALG 251
A LG ++LG
Sbjct: 152 RAFGRLGRAKLSLG 165
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 46.0 bits (104), Expect = 7e-06
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Frame = -1
Query: 454 RHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYL 275
++++A++ +A+ D RN + G LY ++ A++ + +++LNP Y+
Sbjct: 599 KYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNP-------YI 651
Query: 274 GETLVALGRSYED-ENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAE 98
E LG YE NQI++A AY+ + P + + L L+ ++
Sbjct: 652 SEVWYDLGTLYESCHNQISDALDAYQRAAELDPTNPHIKARLQLLRGPNNEQHKIVNAPP 711
Query: 97 LLLPGLXRG*VI*NEGXP*SS 35
+P + I G P S+
Sbjct: 712 SNVPNVQTAKYINQPGVPYSN 732
Score = 34.3 bits (75), Expect = 0.022
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = -1
Query: 457 GRHSEAFQCLNKALSIDPR--NVEGLVAR-GALYANSGTFKKAIEDFETSLKLNPNHANA 287
G H A + + L +DP V + R G +Y F +++E F L P
Sbjct: 452 GSHEHAEEAFMQCLRMDPNFEKVNEIYFRLGIIYKQQHKFAQSLELFRHILDNPPKPLTV 511
Query: 286 RKYLGETLVALGRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTAS 122
+ +G YE + A++AYE LA P H + L +L + ++S
Sbjct: 512 L----DIYFQIGHVYEQRKEYKLAKEAYERVLAETPNHAKVLQQLGWLCHQQSSS 562
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -1
Query: 448 SEAFQCLNKALSI--DPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYL 275
S A+ +AL DP++ + G LY G+ + A E F L+++PN + +
Sbjct: 419 SRAYSAYRQALYHLKDPKDPKLWYGIGILYDRYGSHEHAEEAFMQCLRMDPNF----EKV 474
Query: 274 GETLVALGRSYEDENQITEAQKAYEDCL 191
E LG Y+ +++ ++ + + L
Sbjct: 475 NEIYFRLGIIYKQQHKFAQSLELFRHIL 502
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 43.6 bits (98), Expect = 4e-05
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Frame = -1
Query: 418 LSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG-----ETLVAL 254
L ++P+NVE LV RG + SG KAI F+ +LKL+P+ A+ E
Sbjct: 170 LRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQ 229
Query: 253 GRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELL 92
G + +A + Y + L I P ++E L ++ T L P E L
Sbjct: 230 GNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKL--YMNRATVLLRLKRPEEAL 281
Score = 29.9 bits (64), Expect = 0.47
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Frame = -1
Query: 472 NILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTF-------KKAIEDFETSL 314
++ + G + +A++ ++AL IDP N E VA+ LY N T ++A+ D + +L
Sbjct: 232 DLFRQGNYQDAYEKYSEALQIDPDNKE-TVAK--LYMNRATVLLRLKRPEEALSDSDNAL 288
Query: 313 KLNPNHANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAIIPFHEEAQN-SLDFLKS 137
++ ++ K + AL + E + + Q A E + +E + L+ KS
Sbjct: 289 AIDSSYLKGLKVRAKAHEALEKW---EEAVRDVQSAIELDASDANLRQELRRLQLELKKS 345
Query: 136 K 134
K
Sbjct: 346 K 346
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = -1
Query: 451 HSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 272
HS+A +C+N+A+ +DP +G ++ + ++K+ F ++++N H NA LG
Sbjct: 447 HSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGLG 506
Query: 271 ETLVALGRS 245
+ GR+
Sbjct: 507 MVYLKTGRN 515
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -1
Query: 499 HFVLWQK-ALNILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFE 323
H+ W + LK GR+ +A +A I+P N + G +Y +KKA++ ++
Sbjct: 498 HYNAWYGLGMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYD 557
Query: 322 TSLKLNPNHANARKYLGETLVAL 254
+ KL+ + AR + L+ L
Sbjct: 558 RACKLDEKSSLARFKKAKVLILL 580
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 376 GALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGR 248
G L N+ F KAI F+++L+++P NA LGE GR
Sbjct: 657 GVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGR 699
Score = 29.9 bits (64), Expect = 0.47
Identities = 20/93 (21%), Positives = 37/93 (39%)
Frame = -1
Query: 463 KAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANAR 284
++GR+ A + N+A +DP + L + G ++ A+ L + +
Sbjct: 696 RSGRYVSALKAFNRASILDPDDWYVKYFIATLEKDMGEYEVAVSTLSEILAVRSKELCVQ 755
Query: 283 KYLGETLVALGRSYEDENQITEAQKAYEDCLAI 185
L ET V L + Y + A + E + I
Sbjct: 756 VSLAETYVRLAKLYHARGFYSRAADSLEKSIQI 788
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -1
Query: 349 FKKAIEDFETSLKLNPNHANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAI 185
++ AIE + +L + N+ NA V LG +Y Q++E+++AY D + I
Sbjct: 18 YELAIEQSKKALSFDANNYNAN-------VFLGVAYFSTKQLSESKEAYLDAIKI 65
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 34.3 bits (75), Expect = 0.022
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -1
Query: 370 LYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGRSYEDENQITEAQK 209
L N G+ KA E S+K NP H A K+LG LG + EA K
Sbjct: 303 LIKNGGSISKAAVLLEQSVKENPQHFEAWKWLGRIHTLLGNESRVVEALLEAVK 356
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.067
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -1
Query: 481 KALNILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNP 302
++L LK+ + A +KA+ DP + R + K+A+ DF +L L P
Sbjct: 45 RSLAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAP 104
Query: 301 NHANARKYLGE 269
+ ARK L E
Sbjct: 105 SDPAARKKLRE 115
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 30.7 bits (66), Expect = 0.27
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = -1
Query: 478 ALNILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPN 299
+L L+ +++ AL I+P + + + RG Y G A D+E SL+L+PN
Sbjct: 48 SLTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDPN 107
Query: 298 HANARKYL 275
+ +K L
Sbjct: 108 NTYIQKSL 115
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = -1
Query: 460 AGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARK 281
+G +EA K++++D + + G + ++++ FE K PN +
Sbjct: 428 SGEFAEAISDYQKSIALDDSFIYSHIQLGVAQYKTHAIAESMKTFEDCKKRFPNSSEVYN 487
Query: 280 YLGETLV 260
Y GE L+
Sbjct: 488 YFGEILL 494
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -1
Query: 520 KHKQVNGHFVLWQKALNILKAGRH-SEAFQCLNKALSIDPRNVEGLVARGALYANSGTFK 344
+H + L KAL + + + S+A +ALS DP + + G +
Sbjct: 516 EHLTIMSAMPLINKALAVFQWKKDISQAENLCRQALSADPECDIAIASMAQFLLQQGKAR 575
Query: 343 KAIEDFETSLKL 308
+A+E FE S +L
Sbjct: 576 EALEYFEKSAQL 587
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.62
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = -1
Query: 463 KAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANAR 284
K G +A C N++L I+P + G + A+E F L +NP +
Sbjct: 533 KKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPEDGESW 592
Query: 283 KYLGETLV 260
L ++
Sbjct: 593 NNLASAML 600
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -1
Query: 376 GALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGRSYEDENQITEAQKAYED 197
G Y G +A+ F SLK+NP Y T G + + + A +A+
Sbjct: 528 GKYYYKKGDLLQAMNCFNESLKINP-----LSY--PTWFTYGCAALELQKYDAAMEAFSR 580
Query: 196 CLAIIPFHEEAQNSL 152
CL+I P E+ N+L
Sbjct: 581 CLSINPEDGESWNNL 595
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.1 bits (62), Expect = 0.82
Identities = 24/134 (17%), Positives = 59/134 (44%)
Frame = -1
Query: 490 LWQKALNILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLK 311
L+ ++++ + G++S++ + + L P++ + + G + A+ +
Sbjct: 11 LFDRSIDQFEKGQYSKSLKTIQSVLKKKPKHPDSVALLGLNLCKLHDSRSALLKCGYASS 70
Query: 310 LNPNHANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKT 131
++P ++ L + R +D N + K Y++ LAI P +E +L+++
Sbjct: 71 IDPKS----QFCWHALAIVYRETKDYNN---SLKCYQNALAISPNNESLWYDAAYLQAQL 123
Query: 130 TASKPLIEPAELLL 89
+PL + LL
Sbjct: 124 GLYQPLFDNWNRLL 137
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 421 ALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALGRSY 242
A SID E G Y+ +KA+ F+ +L+LN N+ +A +G V L ++
Sbjct: 330 ASSIDKFRPETCSIIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTH 389
Score = 23.0 bits (47), Expect(2) = 9.5
Identities = 15/66 (22%), Positives = 25/66 (37%)
Frame = -1
Query: 451 HSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 272
H +A +AL ++ + G Y AIE + ++ +N A LG
Sbjct: 354 HEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLG 413
Query: 271 ETLVAL 254
+T L
Sbjct: 414 QTYEVL 419
Score = 20.6 bits (41), Expect(2) = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 259 ALGRSYEDENQITEAQKAYEDCL 191
ALG YE ++ EA K+Y+ L
Sbjct: 445 ALGNCYEKIDRPQEAIKSYKRAL 467
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 241 EDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELL 92
EDEN K EDC A + F + SL ++S T + L + +LL
Sbjct: 684 EDENHRVHHVKVSEDCTATVSF---GKQSLHIVRSSVTLLETLDDYGKLL 730
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/85 (21%), Positives = 32/85 (37%)
Frame = -1
Query: 496 FVLWQKALNILKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETS 317
F+ +Q L+ H ++ Q K L P N L Y+ A++
Sbjct: 461 FMYYQANNPSLRERYHQKSVQSYQKCLEKQPTNTNALFHLAMQYSERRAITDAMQIVRRL 520
Query: 316 LKLNPNHANARKYLGETLVALGRSY 242
L++NP ++ +L V+ Y
Sbjct: 521 LEVNPKYSIVSWHLLVLCVSCSEQY 545
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 463 KAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKL 308
K+G++S+A + + ++ RN G + G L G KKA + + L++
Sbjct: 53 KSGQYSQAELDAKRMIHLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRM 104
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = -1
Query: 349 FKKAIEDFETSLKLNPNHANARKYLGETLVALGRSYEDENQITEAQKAYEDCLAIIPFHE 170
+++ + D L+ + HA A + LVAL R E + I + + AI+ +
Sbjct: 118 YRQVLNDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSK 177
Query: 169 EAQNSLDFLKSKTTASK 119
E Q D + + + K
Sbjct: 178 ELQKKSDDFEKRESEKK 194
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 247 SYEDENQITEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELLLPG 83
+Y+DEN + + D I E S+ F KSKT+ + I A + G
Sbjct: 889 NYDDENSLNRGGTSESDSEFIWDVDESNSGSIVFPKSKTSINLNNINSASASIMG 943
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 326 KIFYGLFECSTIGVQCSSSNKTLYISRIYAQSFIQALK 439
++ YGLFE I + C S + +Y+ + + LK
Sbjct: 262 RLAYGLFEAPEIQIICDPSLEMMYVESHLNHAVFEILK 299
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 205 YEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAEL 95
+ED + E SLD LK+KT+ P++ EL
Sbjct: 445 WEDARYFSKENRELLRSLDSLKAKTSKKDPIVRRNEL 481
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 181 PFHEEAQNSLDFLKSKTTASKPLIEPAELLLPG 83
P+ E N+ D+L K +P P LL PG
Sbjct: 212 PWDEAISNTGDYLLYKKQCERPSYHPWNLLSPG 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,825
Number of Sequences: 5004
Number of extensions: 52236
Number of successful extensions: 172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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