Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_N18
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical pr...    35   0.073
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    33   0.29 

>Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical
           protein W02B9.2 protein.
          Length = 167

 Score = 35.1 bits (77), Expect = 0.073
 Identities = 19/55 (34%), Positives = 21/55 (38%)
 Frame = -1

Query: 740 PERXVGAEGGXXXXRGSD*GGXXGGERGXXXXXXXXGXRAGXVGXXXXXXGXAXR 576
           P+   G  GG    RG D GG  GG+RG        G R G  G      G   R
Sbjct: 80  PDNNGGRGGGRGGDRGGDRGGDRGGDRGGDRGGDRGGDRGGRRGRGGYRDGGGGR 134


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -1

Query: 725 GAEGGXXXXRGSD*GGXXGGERGXXXXXXXXGXRAGXVG 609
           G  GG    RG D GG  GG+RG        G R G  G
Sbjct: 336 GGRGGGGGFRGGDRGGFRGGDRGGFRGGDRGGFRGGDRG 374



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -1

Query: 716 GGXXXXRGSD*GGXXGGERGXXXXXXXXGXRAGXVGXXXXXXGXA 582
           G     RG D GG  GG+RG        G R G  G      G A
Sbjct: 347 GDRGGFRGGDRGGFRGGDRGGFRGGDRGGDRGGFRGGRGVGGGNA 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,851,395
Number of Sequences: 27780
Number of extensions: 63762
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)