Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_N17
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   206   3e-54
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   206   3e-54
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.61 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     27   3.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.3  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   5.6  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.9  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  206 bits (503), Expect = 3e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -2

Query: 590 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 230 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = -1

Query: 825 RYCSX*ESCPHSMSC*T--ATKEGSHYGNPLNGGTIEDKVNGPENXWRNLSLSILCLPKM 652
           +YCS      H+    T  A K+       +NGG++ DKV      +           + 
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212

Query: 651 K*LTALVSPRAKGYKGVTSRWHTKKLPRKTHQG 553
           + +  +   R KG +G T+RW TK+LPRKTH+G
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -3

Query: 712 EWXREHXEKPIPVDSVFAQDEMIDCIGVTKGQ 617
           EW REH EK + + S F Q+EMID IGVT+G+
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  206 bits (503), Expect = 3e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -2

Query: 590 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 230 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = -1

Query: 825 RYCSX*ESCPHSMSC*T--ATKEGSHYGNPLNGGTIEDKVNGPENXWRNLSLSILCLPKM 652
           +YCS      H+    T  A K+       +NGG++ DKV      +           + 
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212

Query: 651 K*LTALVSPRAKGYKGVTSRWHTKKLPRKTHQG 553
           + +  +   R KG +G T+RW TK+LPRKTH+G
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -3

Query: 712 EWXREHXEKPIPVDSVFAQDEMIDCIGVTKGQ 617
           EW REH EK + + S F Q+EMID IGVT+G+
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXLGVSYGVA 578
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 579 SLCANEK 599
           SL AN +
Sbjct: 433 SLPANSR 439


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 720 DKVNGPENXWRNLSLSILCLPKMK*LTALVSPRAKGYKGVTSRWHTKKLPRKT 562
           D +  PE  W+ +SLS L LPK   +          Y    SR H  KLP++T
Sbjct: 626 DTILWPECRWQKVSLSELVLPKKVKI---------AYMKAVSRVHPDKLPQQT 669


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 612 ILWPLVTPMQSIISSWANTESTGIGFSXCSLXH 710
           ILW  +TP+Q+ +SS   T   G+    C L H
Sbjct: 4   ILWANITPIQTFVSSNHLTMLYGLKRFGCRLYH 36


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 590 QREVTPLYPLALGDTNAVNHFILGKHR 670
           QR V P+ P A+G    + HF + K++
Sbjct: 161 QRTVPPIMPFAMGTLGFLTHFDVKKYK 187


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = -1

Query: 753 YGNPLNGGTIEDKVN----GPENXWRNLSLS 673
           Y NP NGG I D +N     P     NLSLS
Sbjct: 4   YSNPENGGQINDNINYSEKRPTMLPENLSLS 34


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 411 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 536
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 821 TVVXKSHAHTQ*AVKQRPKKAHIMEIH 741
           ++  +SH  +Q   ++R KK H+++IH
Sbjct: 333 SIFGRSHGTSQFRRRERVKKRHVIKIH 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,509
Number of Sequences: 5004
Number of extensions: 75203
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)