Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_N17
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 217 7e-57
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 210 1e-54
07_01_0761 + 5849466-5850677 31 1.5
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.4
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.8
06_01_0911 - 7031099-7031779,7031896-7032221,7032306-7032318,703... 28 7.8
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 28 7.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 217 bits (531), Expect = 7e-57
Identities = 102/153 (66%), Positives = 120/153 (78%)
Frame = -2
Query: 572 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 213
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 212 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -1
Query: 741 LNGGTIEDKVN-GPENXWRNLSLSILCLPKMK*LTALVSPRAKGYKGVTSRWHTKKLPRK 565
+NGGTI DKV+ G + + + + + K + + + + KGY+GV +RW +LPRK
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 244
Query: 564 THQG 553
TH+G
Sbjct: 245 THRG 248
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3
Query: 691 EKPIPVDSVFAQDEMIDCIGVTKGQ 617
EK IPVD+VF +DEMID IGVTKG+
Sbjct: 203 EKEIPVDAVFQKDEMIDIIGVTKGK 227
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 210 bits (513), Expect = 1e-54
Identities = 98/145 (67%), Positives = 116/145 (80%)
Frame = -2
Query: 572 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 213
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 212 EKINLKFIDTSSKFGHGRFQTPADK 138
E+I LKFIDTSSKFGHGRFQT +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -1
Query: 741 LNGGTIEDKVN-GPENXWRNLSLSILCLPKMK*LTALVSPRAKGYKGVTSRWHTKKLPRK 565
+NGGTI DKV+ G + + + + + K + + + + KGY+GV +RW +LPRK
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 244
Query: 564 THQG 553
TH+G
Sbjct: 245 THRG 248
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = -3
Query: 691 EKPIPVDSVFAQDEMIDCIGVTKGQ 617
EK IPVD+VF +DEMID IGVTKG+
Sbjct: 203 EKEIPVDAVFQKDEMIDIIGVTKGK 227
>07_01_0761 + 5849466-5850677
Length = 403
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 605 VSLLVGTQRSYPVRHTKXLRKVACI--GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 432
V+LLVG R V V+ + G HP SFT+ RA H K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182
Query: 431 GQGIH 417
G +H
Sbjct: 183 GTVVH 187
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 365 SEKSITPMGGFPHYGEVNN 309
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>06_01_0911 -
7031099-7031779,7031896-7032221,7032306-7032318,
7032402-7032414,7032498-7032510,7032592-7032790
Length = 414
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 650 ND*LHWCHQGPKDTKVSLLV 591
ND LHWC GP DT +L+
Sbjct: 389 NDCLHWCAPGPVDTFNDILM 408
>01_06_1783 + 39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 659 PR*ND*LHWCHQGPKDTKVSLLVGTQR 579
P D LHWC GP DT +L+ T R
Sbjct: 1012 PPPQDCLHWCMPGPVDTWNEMLLETIR 1038
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,315,199
Number of Sequences: 37544
Number of extensions: 513427
Number of successful extensions: 1272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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