Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_N13
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.3  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    26   5.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.2  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 204 IASISAIQMGFDVASRVFECETRLVKSHCLEPPD 305
           +AS+  ++   D+A +V + +T ++   CL+P D
Sbjct: 765 LASVGYLEKAIDLAEKVKDFQTMVILLDCLDPKD 798


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 89  QHPARNGSRLQTIPSPDIELSYIRTFGAVMHXXFKKKTDSID 214
           Q+      R+  I + D +   +++FGA +   FKK+ D I+
Sbjct: 191 QYAKAMAMRVVAIDTGDDKAELVKSFGAEVFLDFKKEADMIE 232


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 86  AQHPARNGSRLQTIPSPDIELSYIRTFGAVMHXXFKKKTDSIDL 217
           + H   +  + + IPSPD +LS       V      K TDS+ +
Sbjct: 421 SSHSNHSNEKFEQIPSPDEKLSRTDIDTHVKQLQTTKSTDSLSI 464


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 119 VDDFRSWRGVVLGRAASCCDLLRLS 45
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,290
Number of Sequences: 5004
Number of extensions: 43896
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)