Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_N12
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    30   2.0  
05_03_0635 - 16446805-16447716                                         30   2.6  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.5  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    29   4.5  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   6.0  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   6.0  

>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = -2

Query: 707 PPLPGXLGYINPDHQIPDSIHQPPPDXTSISINPPDAVLEGVRAGVKASVVIRG 546
           PP PG    I P         Q PPD T+    PP A   G   G   S ++ G
Sbjct: 25  PPPPGGNSMIMPSSLTTAGTSQSPPDATTAGAPPPPAPSVGAWGGNVPSGLLIG 78


>05_03_0635 - 16446805-16447716
          Length = 303

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 722 PLCIKPPLPGXLGYINPDHQIPDSIHQPPPDX-TSISINPPDAVLEGVRAGVKASVVIRG 546
           P+   PP P     + P   +      PPPD  TS+S++PP A      A + AS V+ G
Sbjct: 173 PVLPPPPPPAKRLCVAPPTGVEH--RAPPPDPPTSLSLSPPGA----AAAAISASTVVGG 226

Query: 545 S 543
           S
Sbjct: 227 S 227


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 78  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 179
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = -3

Query: 655 IPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 488
           +P  + P    P P  P  P     APG   P S   P+ Y T  P   G   G  PP
Sbjct: 147 MPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 70  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 216
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 237  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 58
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 57   ILHSF 43
            +LHSF
Sbjct: 1408 LLHSF 1412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,502,572
Number of Sequences: 37544
Number of extensions: 518540
Number of successful extensions: 1497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)