Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_N06
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   124   2e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   121   1e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.15 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  124 bits (299), Expect = 2e-29
 Identities = 59/92 (64%), Positives = 68/92 (73%)
 Frame = -3

Query: 602 PAQDHQPITEASYVNIPXIALCXTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 423
           P  D Q I EAS+VNIP IALC TDS L  VDIAIP N K   SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188

Query: 422 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 327
           G L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  121 bits (291), Expect = 1e-28
 Identities = 57/90 (63%), Positives = 67/90 (74%)
 Frame = -3

Query: 602 PAQDHQPITEASYVNIPXIALCXTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 423
           P  D Q I EAS+VNIP IALC TDS L  VD+AIP N K   SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 422 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 333
           G + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 602 PAQDHQPITEASYVNIPXIALCXTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 441
           P ++     EA   ++P I +  TD+  R V   IP N  S     L+  LL+R
Sbjct: 188 PLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 578 TEASYVNIPXIALCXTDSPLRFVDIAIPCNTKSSHSI 468
           T A    +  + LC  +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 470 IGLMWWLLAREVLRLRGVLPRDQRWD 393
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 415 FPVTSAGML--WLICSSTVTLKKVKRM 341
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,381
Number of Sequences: 5004
Number of extensions: 46550
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)