Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_N03
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    28   9.0  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    28   9.0  

>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 539 GXXPXPXGPPXPXXPTGP 592
           G  P P GPP P  P GP
Sbjct: 221 GAPPGPPGPPGPPGPQGP 238


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 548 PXPXGPPXPXXPTGPXCQLCXPXXXXXXXAXXPSXP 655
           P P GPP P  P GP  Q   P          P  P
Sbjct: 255 PGPAGPPGPPGPIGPPGQPGAPGSSQPGPQGPPGDP 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,977,616
Number of Sequences: 27780
Number of extensions: 95075
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)