Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_N01
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 200 1e-51
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 197 7e-51
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.6
06_03_0543 + 21967787-21970261 29 5.6
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 29 5.6
02_02_0084 + 6637145-6638677 29 5.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 9.7
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 200 bits (488), Expect = 1e-51
Identities = 91/152 (59%), Positives = 115/152 (75%)
Frame = -1
Query: 770 EXPXDXXVXSSRPFGQRAVLKFAAHTGATXIAXRFTPGAFTNQIQAAFREXRLLIVLDPA 591
E P D V S+RP+GQRAVLKFA +TGA IA R TPG FTNQ+Q +F E RLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 590 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 411
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGT 192
Query: 410 LPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 315
+ +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 197 bits (481), Expect = 7e-51
Identities = 89/148 (60%), Positives = 112/148 (75%)
Frame = -1
Query: 770 EXPXDXXVXSSRPFGQRAVLKFAAHTGATXIAXRFTPGAFTNQIQAAFREXRLLIVLDPA 591
E P D V S+RP+GQRAVLKFA +TGA IA R TPG FTNQ+Q +F E RLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 590 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 411
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
Query: 410 LPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
+ +WDV+VDLFFYRDPEE+++ E++
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 708 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 601
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 698 HTGATXIAXRFTPGAFTNQIQAAFREXRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 525
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 524 DSPLR 510
+ P++
Sbjct: 330 EQPMQ 334
>02_02_0084 + 6637145-6638677
Length = 510
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -1
Query: 710 KFAAHTGATXIAXRFTPGAF---TNQIQAAFREXRLLIVLDPAQ-DHQPITEASYVNIPV 543
+ A H GAT + PG F ++ A ++LD + D + ++ +P
Sbjct: 63 RVARHGGATVLRVNMPPGPFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTF--MPS 120
Query: 542 IALCNTDSPLRFVDIAIPCNTK 477
+AL PL F+D A P + K
Sbjct: 121 LALFGGHRPLAFLDAADPRHAK 142
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +1
Query: 472 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRXSRNAAWIWLV 651
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 652 KAPGVKRXAIXVA 690
K + + V+
Sbjct: 64 KRSRINAALLFVS 76
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,695
Number of Sequences: 37544
Number of extensions: 398940
Number of successful extensions: 1097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -