Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M16
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   2.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    22   9.0  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 598 SXPXPPPPPXLL 633
           S P PPPPP LL
Sbjct: 369 SPPPPPPPPELL 380



 Score = 21.0 bits (42), Expect(2) = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 595 SSXPXPPPPP 624
           S  P PPPPP
Sbjct: 367 SYSPPPPPPP 376


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 21.8 bits (44), Expect(2) = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P +  P  + P P PPP
Sbjct: 224 PPTYTPKQADPLPAPPP 240



 Score = 21.8 bits (44), Expect(2) = 9.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 604 PXPPPPPXL 630
           P PPPPP L
Sbjct: 238 PPPPPPPTL 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,774
Number of Sequences: 5004
Number of extensions: 11832
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)