Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M16
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    25   1.8  
05_07_0031 - 27183252-27183317,27183542-27184282                       24   5.9  
09_03_0145 - 12749288-12751510                                         24   9.0  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 25.0 bits (52), Expect(2) = 1.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P    P  S P PPPPP
Sbjct: 554 PSGNKPAFSPPPPPPPP 570



 Score = 25.0 bits (52), Expect(2) = 6.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P    P  S P PPPPP
Sbjct: 608 PPPILPNRSVPPPPPPP 624



 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 598 SXPXPPPPPXLL 633
           S P PPPPP +L
Sbjct: 601 SPPPPPPPPPIL 612



 Score = 21.8 bits (44), Expect(2) = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 604 PXPPPPPXL 630
           P PPPPP L
Sbjct: 637 PPPPPPPSL 645


>05_07_0031 - 27183252-27183317,27183542-27184282
          Length = 268

 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 589 PXSSXPXPPPPP 624
           P  S P PPPPP
Sbjct: 113 PQPSPPPPPPPP 124



 Score = 23.4 bits (48), Expect(2) = 5.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 604 PXPPPPPXLL 633
           P PPPPP LL
Sbjct: 151 PPPPPPPPLL 160


>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 24.2 bits (50), Expect(2) = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P    P +  P PPPPP
Sbjct: 20  PFKPKPTNPSPPPPPPP 36



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 598 SXPXPPPPPXL 630
           S P PPPPP +
Sbjct: 29  SPPPPPPPPGI 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,747,077
Number of Sequences: 37544
Number of extensions: 138118
Number of successful extensions: 2278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)