Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M16
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    26   5.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    26   5.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    26   6.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 25.8 bits (54), Expect(2) = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P    P S  P PPPPP
Sbjct: 748 PGGLPPISGGPPPPPPP 764



 Score = 21.0 bits (42), Expect(2) = 5.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 604 PXPPPPPXL 630
           P PPPPP +
Sbjct: 784 PPPPPPPGM 792


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 25.8 bits (54), Expect(2) = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P    P S  P PPPPP
Sbjct: 748 PGGLPPISGGPPPPPPP 764



 Score = 21.0 bits (42), Expect(2) = 5.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 604 PXPPPPPXL 630
           P PPPPP +
Sbjct: 784 PPPPPPPGM 792


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.8 bits (54), Expect(2) = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 574 PXSXXPXSSXPXPPPPP 624
           P    P S  P PPPPP
Sbjct: 331 PGGLPPISGGPPPPPPP 347



 Score = 21.0 bits (42), Expect(2) = 6.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 604 PXPPPPPXL 630
           P PPPPP +
Sbjct: 367 PPPPPPPGM 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,522,842
Number of Sequences: 27780
Number of extensions: 84485
Number of successful extensions: 728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)