Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_M13
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 177 8e-45
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 174 5e-44
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.0
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 29 3.0
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.3
06_03_0543 + 21967787-21970261 29 5.3
02_02_0084 + 6637145-6638677 29 5.3
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.0
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.2
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 177 bits (431), Expect = 8e-45
Identities = 79/132 (59%), Positives = 101/132 (76%)
Frame = -3
Query: 710 KFAAHTGATXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALC 531
KFA +TGA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C
Sbjct: 93 KFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152
Query: 530 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPE 351
+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPE
Sbjct: 153 DTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPE 212
Query: 350 ESEKDEQQAKEQ 315
E+++ E++A Q
Sbjct: 213 EAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 174 bits (424), Expect = 5e-44
Identities = 77/128 (60%), Positives = 98/128 (76%)
Frame = -3
Query: 710 KFAAHTGATXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALC 531
KFA +TGA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C
Sbjct: 93 KFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152
Query: 530 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPE 351
+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPE
Sbjct: 153 DTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPE 212
Query: 350 ESEKDEQQ 327
E+++ E++
Sbjct: 213 EAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -3
Query: 725 SACFTKFAAHTGATXIAXRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVN 552
++C+ F HT +T R TP AF + AA E R+ + + ++ EA Y +
Sbjct: 262 NSCWGVFR-HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRH 320
Query: 551 IPVIALCNTDSPLR 510
I V + + + P++
Sbjct: 321 IEVFDMRSPEQPMQ 334
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 708 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 601
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>02_02_0084 + 6637145-6638677
Length = 510
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = -3
Query: 713 TKFAAHTGATXIAXRFTPGAF---TNQIQAAFREPRLLIVLDPAQ-DHQPITEASYVNIP 546
++ A H GAT + PG F ++ A ++LD + D + ++ +P
Sbjct: 62 SRVARHGGATVLRVNMPPGPFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTF--MP 119
Query: 545 VIALCNTDSPLRFVDIAIPCNTK 477
+AL PL F+D A P + K
Sbjct: 120 SLALFGGHRPLAFLDAADPRHAK 142
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,022,303
Number of Sequences: 37544
Number of extensions: 382152
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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