Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_M12
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    30   0.49 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.6  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   7.9  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -3

Query: 321 CENGRCSLDGACECDSGYILSNGTCIRNNTACSANCSAGGEG 196
           C+NG C+ DG C    G     G    NN   S N S    G
Sbjct: 65  CKNGTCAGDGFCNGTGGSASCTGCPALNNRIRSLNASKSQSG 106


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
 Frame = -3

Query: 573  PMSNGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNT 394
            P+ NG     C     NGAC  P +  CD+G  L P          +     +   +P  
Sbjct: 811  PIVNGVSYQNC-----NGACYNPSQYGCDNG-ALGPVQSSSTTSSITPTPTTTSSITPTP 864

Query: 393  CTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSG--YILSNGTC 247
             T         T   +C      A  +  C  D  C    G  Y+  NG C
Sbjct: 865  TTTSTTTTAQSTGMQLCGSNYYDA-SSYYCDNDQLCPIIDGVDYLSCNGAC 914



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 525  NGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTNSNV 346
            NGAC  P +  C DG  LSP        V + +   +   +P T T       + T++NV
Sbjct: 911  NGACYNPSQYVCSDG-SLSPN------TVTTTKATTTFTPTPTTTTTPTPTTTSATSTNV 963


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 438 CSERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 337
           C E C N+ C    TC   K    +D     CY+
Sbjct: 331 CGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQ 364


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 408 NSESSRSAQNRPAGRRKDPRDSXGSHRRTCTYRAPSTPH 524
           NS S  ++QN    ++    +S G+  ++  Y A STPH
Sbjct: 579 NSNSELASQNPLYAQQAVSMESMGNAIQSSAYSAMSTPH 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,405
Number of Sequences: 5004
Number of extensions: 60769
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)